Strain Fitness in Escherichia fergusonii Becca around EFB2_03385

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
3,535,716	+		EFB2_03383	0.61	+0.9
3,535,716	+		EFB2_03383	0.61	-0.1
3,535,716	+		EFB2_03383	0.61	+1.9
3,535,717	-		EFB2_03383	0.62	-0.4
3,535,717	-		EFB2_03383	0.62	+1.3
3,535,717	-		EFB2_03383	0.62	+1.5
3,535,717	-		EFB2_03383	0.62	+2.4
3,535,717	-		EFB2_03383	0.62	-0.5
3,535,717	-		EFB2_03383	0.62	+0.0
3,535,717	-		EFB2_03383	0.62	-0.6
3,535,717	-		EFB2_03383	0.62	-1.5
3,535,717	-		EFB2_03383	0.62	+1.6
3,535,717	-		EFB2_03383	0.62	-1.7
3,535,717	-		EFB2_03383	0.62	-1.4
3,535,717	-		EFB2_03383	0.62	+0.4
3,535,717	-		EFB2_03383	0.62	-0.1
3,535,717	-		EFB2_03383	0.62	+5.8
3,535,717	-		EFB2_03383	0.62	+1.9
3,535,717	-		EFB2_03383	0.62	-0.9
3,535,717	-		EFB2_03383	0.62	-0.8
3,535,753	+		EFB2_03383	0.72	+1.6
3,535,753	+		EFB2_03383	0.72	+1.2
3,535,753	+		EFB2_03383	0.72	+1.0
3,535,753	+		EFB2_03383	0.72	-0.6
3,535,754	-		EFB2_03383	0.72	+0.9
3,535,754	-		EFB2_03383	0.72	+2.0
3,535,754	-		EFB2_03383	0.72	+0.6
3,535,754	-		EFB2_03383	0.72	-1.5
3,535,754	-		EFB2_03383	0.72	-0.4
3,535,754	-		EFB2_03383	0.72	-0.4
3,535,754	-		EFB2_03383	0.72	-1.7
3,535,755	+		EFB2_03383	0.73	-0.8
3,535,755	+		EFB2_03383	0.73	+0.1
3,535,755	+		EFB2_03383	0.73	-0.1
3,535,755	+		EFB2_03383	0.73	+2.2
3,535,755	+		EFB2_03383	0.73	-0.4
3,535,755	+		EFB2_03383	0.73	-1.8
3,535,755	+		EFB2_03383	0.73	+0.6
3,535,755	+		EFB2_03383	0.73	-1.4
3,535,755	+		EFB2_03383	0.73	+1.2
3,535,755	+		EFB2_03383	0.73	+0.2
3,535,755	+		EFB2_03383	0.73	-1.9
3,535,756	-		EFB2_03383	0.73	+1.2
3,535,756	-		EFB2_03383	0.73	+0.2
3,535,756	-		EFB2_03383	0.73	-0.4
3,535,756	-		EFB2_03383	0.73	+1.5
3,535,756	-		EFB2_03383	0.73	-0.1
3,535,756	-		EFB2_03383	0.73	-0.4
3,535,756	-		EFB2_03383	0.73	+0.6
3,535,764	+		EFB2_03383	0.75	+0.6
3,535,764	+		EFB2_03383	0.75	-0.8
3,535,764	+		EFB2_03383	0.75	-1.1
3,535,764	+		EFB2_03383	0.75	+0.4
3,535,765	-		EFB2_03383	0.76	+0.1
3,535,765	-		EFB2_03383	0.76	-0.6
3,535,765	-		EFB2_03383	0.76	-1.9
3,535,765	-		EFB2_03383	0.76	+0.1
3,535,765	-		EFB2_03383	0.76	-1.7
3,535,765	-		EFB2_03383	0.76	-2.0
3,535,765	-		EFB2_03383	0.76	+0.9
3,535,765	-		EFB2_03383	0.76	-0.8
3,535,765	-		EFB2_03383	0.76	-0.8
3,535,765	-		EFB2_03383	0.76	+0.2
3,535,765	-		EFB2_03383	0.76	-1.4
3,535,765	-		EFB2_03383	0.76	+1.1
3,535,787	-		EFB2_03383	0.82	+2.2
3,535,811	+		EFB2_03383	0.89	-0.1
3,535,812	-		EFB2_03383	0.89	-1.1
3,535,812	-		EFB2_03383	0.89	-1.8
3,535,812	-		EFB2_03383	0.89	-1.1
3,535,812	-		EFB2_03383	0.89	-0.3
3,535,812	-		EFB2_03383	0.89	-2.3
3,535,812	-		EFB2_03383	0.89	-0.8
3,535,812	-		EFB2_03383	0.89	-0.9
3,535,812	-		EFB2_03383	0.89	-1.8
3,535,812	-		EFB2_03383	0.89	-1.6
3,535,845	-				-1.4
3,535,845	-				-2.0
3,535,845	-				+0.4
3,535,845	-				-2.0
3,535,849	+				+1.2
3,535,850	-				+1.0
3,535,884	+		EFB2_03384	0.10	+1.4
3,535,885	-		EFB2_03384	0.10	+0.4
3,535,885	-		EFB2_03384	0.10	+1.1
3,535,885	-		EFB2_03384	0.10	+0.2
3,535,885	-		EFB2_03384	0.10	+1.6
3,535,887	+		EFB2_03384	0.11	+2.2
3,535,888	-		EFB2_03384	0.11	-0.8
3,535,941	-		EFB2_03384	0.24	+1.4
3,535,941	-		EFB2_03384	0.24	-1.6
3,535,968	+		EFB2_03384	0.31	-0.6
3,535,969	-		EFB2_03384	0.31	+1.2
3,535,969	-		EFB2_03384	0.31	-1.8
3,535,969	-		EFB2_03384	0.31	+1.4
3,535,973	-		EFB2_03384	0.32	-0.0
3,535,986	-		EFB2_03384	0.35	+1.5
3,535,986	-		EFB2_03384	0.35	-0.8
3,535,986	-		EFB2_03384	0.35	+1.4
3,535,999	-		EFB2_03384	0.39	-0.1
3,536,086	-		EFB2_03384	0.60	+0.8
3,536,189	-		EFB2_03384	0.85	+0.2
3,536,256	+				+0.2
3,536,256	+				+2.0
3,536,256	+				-0.9
3,536,256	+				+2.2
3,536,257	-				+1.6
3,536,257	-				-3.1
3,536,257	-				-1.9
3,536,260	-				+1.2
3,536,260	-				+1.6
3,536,260	-				+0.3
3,536,288	+				-0.6
3,536,300	-				-1.2
3,536,360	+				-0.6
3,536,360	+				-0.1
3,536,361	-				-0.6
3,536,362	+				-1.7
3,536,411	+				-1.9
3,536,411	+				-1.2
3,536,411	+				-1.7
3,536,411	+				+2.2
3,536,412	-				+0.5
3,536,412	-				+0.6
3,536,463	+				+2.0
3,536,465	+				-0.9
3,536,465	+				+1.5
3,536,466	-				-1.7
3,536,466	-				+2.4
3,536,496	+				-0.1
3,536,497	-				-0.9
3,536,500	+				-0.4
3,536,501	-				-1.9
3,536,501	-				+0.2
3,536,502	+				-2.5
3,536,502	+				+1.5
3,536,502	+				-0.4
3,536,502	+				-0.0
3,536,502	+				+0.6
3,536,503	-				-0.4
3,536,503	-				+1.5
3,536,518	-				+0.9
3,536,624	+				+0.9
3,536,624	+				+1.8
3,536,624	+				-0.6
3,536,624	+				+1.2
3,536,624	+				+2.8
3,536,624	+				+1.1
3,536,625	-				+0.1
3,536,626	+				-0.8
3,536,626	+				+0.5
3,536,626	+				-0.1
3,536,626	+				+0.3
3,536,626	+				-1.0
3,536,626	+				-0.1
3,536,626	+				-1.1
3,536,627	-				-2.9
3,536,627	-				-2.2
3,536,627	-				-0.0
3,536,627	-				-1.2
3,536,627	-				+2.6
3,536,627	-				-2.3
3,536,627	-				-0.6
3,536,627	-				-1.1
3,536,627	-				-0.8
3,536,627	-				+2.2
3,536,633	+				-2.0
3,536,633	+				+0.9
3,536,641	-		EFB2_03385	0.12	-1.7
3,536,660	+		EFB2_03385	0.30	-0.2
3,536,661	-		EFB2_03385	0.31	-2.2
3,536,666	+		EFB2_03385	0.35	+2.1
3,536,666	+		EFB2_03385	0.35	-0.4
3,536,667	-		EFB2_03385	0.36	-0.5
3,536,671	+		EFB2_03385	0.40	-0.4
3,536,671	+		EFB2_03385	0.40	+1.3
3,536,671	+		EFB2_03385	0.40	-1.2
3,536,671	+		EFB2_03385	0.40	-3.1
3,536,672	-		EFB2_03385	0.41	-1.0
3,536,672	-		EFB2_03385	0.41	+1.3
3,536,672	-		EFB2_03385	0.41	-1.6
3,536,675	+		EFB2_03385	0.44	-0.2
3,536,675	+		EFB2_03385	0.44	+2.8
3,536,675	+		EFB2_03385	0.44	-0.3
3,536,676	-		EFB2_03385	0.44	-1.7
3,536,690	-		EFB2_03385	0.57	-0.7
3,536,714	+		EFB2_03385	0.80	-1.4
3,536,714	+		EFB2_03385	0.80	-0.5
3,536,714	+		EFB2_03385	0.80	+0.3
3,536,715	-		EFB2_03385	0.81	+0.6
3,536,717	+		EFB2_03385	0.82	-0.8
3,536,749	+				-0.6
3,536,769	+				+0.2
3,536,770	-				-1.4
3,536,770	-				+1.4
3,536,782	+				+1.0
3,536,782	+				-0.6
3,536,782	+				+0.4
3,536,782	+				+0.7
3,536,782	+				+1.2
3,536,782	+				-2.2
3,536,782	+				+0.8
3,536,783	-				-1.5
3,536,783	-				+0.6
3,536,783	-				-2.0
3,536,783	-				-2.1
3,536,783	-				-0.9
3,536,791	+				-2.6
3,536,856	-				-0.6
3,536,897	-				-0.8
3,536,897	-				-0.6
3,536,913	-				+1.5
3,536,920	-				+1.6
3,536,938	+				-1.9
3,536,939	-				+0.4
3,536,939	-				+1.4
3,537,027	+				-0.2
3,537,040	-				-0.6
3,537,040	-				-3.0
3,537,105	+		EFB2_03386	0.13	-0.7
3,537,111	+		EFB2_03386	0.13	+0.5
3,537,118	-		EFB2_03386	0.14	-2.2
3,537,118	-		EFB2_03386	0.14	+1.1
3,537,135	+		EFB2_03386	0.15	-1.1
3,537,183	+		EFB2_03386	0.19	+1.6
3,537,183	+		EFB2_03386	0.19	-0.9
3,537,183	+		EFB2_03386	0.19	+0.5
3,537,183	+		EFB2_03386	0.19	-2.9
3,537,184	-		EFB2_03386	0.19	+0.6
3,537,184	-		EFB2_03386	0.19	+0.7
3,537,184	-		EFB2_03386	0.19	-0.4
3,537,184	-		EFB2_03386	0.19	-0.2
3,537,187	+		EFB2_03386	0.19	-1.8
3,537,188	-		EFB2_03386	0.19	+1.4
3,537,188	-		EFB2_03386	0.19	-0.7
3,537,188	-		EFB2_03386	0.19	-1.8
3,537,188	-		EFB2_03386	0.19	+0.7
3,537,188	-		EFB2_03386	0.19	-0.8
3,537,188	-		EFB2_03386	0.19	-0.9
3,537,202	+		EFB2_03386	0.20	-0.9
3,537,202	+		EFB2_03386	0.20	+1.1
3,537,202	+		EFB2_03386	0.20	+1.0
3,537,202	+		EFB2_03386	0.20	+0.5
3,537,202	+		EFB2_03386	0.20	-1.9
3,537,202	+		EFB2_03386	0.20	+2.0
3,537,202	+		EFB2_03386	0.20	+3.2
3,537,202	+		EFB2_03386	0.20	+1.2
3,537,202	+		EFB2_03386	0.20	-2.4
3,537,202	+		EFB2_03386	0.20	+1.2
3,537,202	+		EFB2_03386	0.20	-0.4
3,537,203	-		EFB2_03386	0.20	-2.1
3,537,203	-		EFB2_03386	0.20	+1.0
3,537,203	-		EFB2_03386	0.20	+1.6
3,537,241	+		EFB2_03386	0.23	-1.4
3,537,241	+		EFB2_03386	0.23	+2.9
3,537,241	+		EFB2_03386	0.23	+1.6
3,537,241	+		EFB2_03386	0.23	+1.9
3,537,242	-		EFB2_03386	0.23	-1.1
3,537,242	-		EFB2_03386	0.23	+0.2
3,537,258	+		EFB2_03386	0.25	-0.9
3,537,259	-		EFB2_03386	0.25	+0.2
3,537,259	-		EFB2_03386	0.25	-0.9
3,537,259	-		EFB2_03386	0.25	+3.1
3,537,273	+		EFB2_03386	0.26	+0.0
3,537,273	+		EFB2_03386	0.26	+2.4
3,537,273	+		EFB2_03386	0.26	-1.6
3,537,273	+		EFB2_03386	0.26	-1.1
3,537,273	+		EFB2_03386	0.26	+3.2
3,537,273	+		EFB2_03386	0.26	+2.8
3,537,273	+		EFB2_03386	0.26	+1.8
3,537,274	-		EFB2_03386	0.26	-0.3
3,537,274	-		EFB2_03386	0.26	+1.4
3,537,274	-		EFB2_03386	0.26	+5.7
3,537,274	-		EFB2_03386	0.26	-0.9
3,537,274	-		EFB2_03386	0.26	-1.9
3,537,274	-		EFB2_03386	0.26	-0.8
3,537,274	-		EFB2_03386	0.26	+0.1
3,537,274	-		EFB2_03386	0.26	+0.6
3,537,276	+		EFB2_03386	0.26	-1.1
3,537,276	+		EFB2_03386	0.26	-1.7
3,537,276	+		EFB2_03386	0.26	+1.5
3,537,276	+		EFB2_03386	0.26	-2.4
3,537,276	+		EFB2_03386	0.26	-0.4
3,537,276	+		EFB2_03386	0.26	+0.4
3,537,276	+		EFB2_03386	0.26	+0.3
3,537,276	+		EFB2_03386	0.26	+0.1
3,537,276	+		EFB2_03386	0.26	+0.7
3,537,276	+		EFB2_03386	0.26	+0.3
3,537,276	+		EFB2_03386	0.26	+0.6
3,537,276	+		EFB2_03386	0.26	-0.9
3,537,276	+		EFB2_03386	0.26	+1.1
3,537,276	+		EFB2_03386	0.26	-1.8
3,537,276	+		EFB2_03386	0.26	+1.0
3,537,276	+		EFB2_03386	0.26	-1.1
3,537,276	+		EFB2_03386	0.26	+2.8
3,537,276	+		EFB2_03386	0.26	-1.5
3,537,277	-		EFB2_03386	0.26	+0.3
3,537,277	-		EFB2_03386	0.26	+1.3
3,537,277	-		EFB2_03386	0.26	+1.2
3,537,277	-		EFB2_03386	0.26	-0.9
3,537,277	-		EFB2_03386	0.26	+0.5
3,537,277	-		EFB2_03386	0.26	+3.5
3,537,277	-		EFB2_03386	0.26	+1.6
3,537,277	-		EFB2_03386	0.26	-0.6
3,537,277	-		EFB2_03386	0.26	-1.4
3,537,277	-		EFB2_03386	0.26	-0.9
3,537,277	-		EFB2_03386	0.26	+1.6
3,537,277	-		EFB2_03386	0.26	+0.9
3,537,277	-		EFB2_03386	0.26	-1.7
3,537,277	-		EFB2_03386	0.26	+1.0
3,537,295	-		EFB2_03386	0.28	+0.2
3,537,351	+		EFB2_03386	0.32	+2.6
3,537,352	-		EFB2_03386	0.32	+0.7
3,537,352	-		EFB2_03386	0.32	+2.4
3,537,376	+		EFB2_03386	0.34	-2.3
3,537,376	+		EFB2_03386	0.34	+3.2
3,537,376	+		EFB2_03386	0.34	-1.5
3,537,376	+		EFB2_03386	0.34	-1.1
3,537,377	-		EFB2_03386	0.34	-1.1
3,537,377	-		EFB2_03386	0.34	-1.7
3,537,377	-		EFB2_03386	0.34	-0.5
3,537,396	+		EFB2_03386	0.35	+1.5
3,537,396	+		EFB2_03386	0.35	+1.2
3,537,469	+		EFB2_03386	0.41	-0.4
3,537,469	+		EFB2_03386	0.41	-0.6
3,537,469	+		EFB2_03386	0.41	+1.6
3,537,469	+		EFB2_03386	0.41	-1.4
3,537,475	+		EFB2_03386	0.42	-1.5
3,537,475	+		EFB2_03386	0.42	+0.1
3,537,475	+		EFB2_03386	0.42	+2.3
3,537,476	-		EFB2_03386	0.42	-0.1
3,537,476	-		EFB2_03386	0.42	-1.4
3,537,521	-		EFB2_03386	0.45	+2.2
3,537,540	+		EFB2_03386	0.47	-0.6
3,537,540	+		EFB2_03386	0.47	+0.6
3,537,541	-		EFB2_03386	0.47	-0.9
3,537,541	-		EFB2_03386	0.47	-0.6
3,537,541	-		EFB2_03386	0.47	-0.4
3,537,541	-		EFB2_03386	0.47	+0.3
3,537,569	-		EFB2_03386	0.49	+1.5
3,537,576	+		EFB2_03386	0.49	+1.6
3,537,597	+		EFB2_03386	0.51	+0.1
3,537,597	+		EFB2_03386	0.51	-1.5
3,537,598	-		EFB2_03386	0.51	+0.1
3,537,606	+		EFB2_03386	0.52	-1.1
3,537,606	+		EFB2_03386	0.52	+0.3
3,537,606	+		EFB2_03386	0.52	-1.1
3,537,606	+		EFB2_03386	0.52	-1.9
3,537,607	-		EFB2_03386	0.52	+0.2
3,537,607	-		EFB2_03386	0.52	-0.6
3,537,708	+		EFB2_03386	0.60	-0.4
3,537,708	+		EFB2_03386	0.60	-1.7
3,537,709	-		EFB2_03386	0.60	-1.5
3,537,709	-		EFB2_03386	0.60	-1.5
3,537,709	-		EFB2_03386	0.60	-1.7