Strain Fitness in Escherichia fergusonii Becca around EFB2_03268

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
3,414,831	+		EFB2_03267	0.39	-0.4
3,414,831	+		EFB2_03267	0.39	-0.2
3,414,831	+		EFB2_03267	0.39	-0.2
3,414,831	+		EFB2_03267	0.39	-0.3
3,414,831	+		EFB2_03267	0.39	-0.0
3,414,831	+		EFB2_03267	0.39	+1.5
3,414,831	+		EFB2_03267	0.39	-0.9
3,414,831	+		EFB2_03267	0.39	+1.7
3,414,831	+		EFB2_03267	0.39	+0.1
3,414,831	+		EFB2_03267	0.39	-0.4
3,414,831	+		EFB2_03267	0.39	+1.5
3,414,831	+		EFB2_03267	0.39	-0.9
3,414,831	+		EFB2_03267	0.39	-1.4
3,414,831	+		EFB2_03267	0.39	-0.8
3,414,832	-		EFB2_03267	0.39	+1.3
3,414,832	-		EFB2_03267	0.39	-0.1
3,414,832	-		EFB2_03267	0.39	-0.6
3,414,832	-		EFB2_03267	0.39	-0.6
3,414,832	-		EFB2_03267	0.39	+1.8
3,414,832	-		EFB2_03267	0.39	+1.7
3,414,832	-		EFB2_03267	0.39	-0.5
3,414,832	-		EFB2_03267	0.39	+0.9
3,414,832	-		EFB2_03267	0.39	+0.3
3,414,833	+		EFB2_03267	0.39	+0.2
3,414,834	-		EFB2_03267	0.39	+0.1
3,414,903	+		EFB2_03267	0.45	-0.8
3,414,959	+		EFB2_03267	0.50	-1.9
3,414,959	+		EFB2_03267	0.50	-2.0
3,414,960	-		EFB2_03267	0.50	-2.1
3,414,960	-		EFB2_03267	0.50	+0.8
3,415,062	+		EFB2_03267	0.58	+0.2
3,415,062	+		EFB2_03267	0.58	-0.3
3,415,062	+		EFB2_03267	0.58	+0.6
3,415,062	+		EFB2_03267	0.58	+0.1
3,415,062	+		EFB2_03267	0.58	-0.2
3,415,062	+		EFB2_03267	0.58	+0.5
3,415,063	-		EFB2_03267	0.58	+0.8
3,415,063	-		EFB2_03267	0.58	+1.3
3,415,063	-		EFB2_03267	0.58	-2.1
3,415,063	-		EFB2_03267	0.58	+1.0
3,415,063	-		EFB2_03267	0.58	+0.6
3,415,063	-		EFB2_03267	0.58	-0.6
3,415,063	-		EFB2_03267	0.58	+1.4
3,415,091	+		EFB2_03267	0.61	-2.1
3,415,091	+		EFB2_03267	0.61	-1.1
3,415,091	+		EFB2_03267	0.61	+2.0
3,415,110	+		EFB2_03267	0.62	-1.7
3,415,110	+		EFB2_03267	0.62	-2.4
3,415,111	-		EFB2_03267	0.62	-1.9
3,415,111	-		EFB2_03267	0.62	-1.2
3,415,136	+		EFB2_03267	0.64	+1.3
3,415,136	+		EFB2_03267	0.64	+0.7
3,415,136	+		EFB2_03267	0.64	+3.0
3,415,137	-		EFB2_03267	0.65	-1.2
3,415,137	-		EFB2_03267	0.65	-0.8
3,415,137	-		EFB2_03267	0.65	-0.8
3,415,137	-		EFB2_03267	0.65	-0.4
3,415,137	-		EFB2_03267	0.65	-0.4
3,415,137	-		EFB2_03267	0.65	-3.6
3,415,153	-		EFB2_03267	0.66	+1.3
3,415,296	+		EFB2_03267	0.78	+1.0
3,415,299	-		EFB2_03267	0.78	-0.8
3,415,308	+		EFB2_03267	0.79	+3.2
3,415,309	-		EFB2_03267	0.79	+0.7
3,415,315	-		EFB2_03267	0.79	+1.3
3,415,315	-		EFB2_03267	0.79	-0.9
3,415,324	-		EFB2_03267	0.80	+0.2
3,415,324	-		EFB2_03267	0.80	-1.1
3,415,324	-		EFB2_03267	0.80	+1.9
3,415,343	+		EFB2_03267	0.82	+1.2
3,415,343	+		EFB2_03267	0.82	+1.4
3,415,343	+		EFB2_03267	0.82	-0.4
3,415,343	+		EFB2_03267	0.82	+0.5
3,415,343	+		EFB2_03267	0.82	+3.1
3,415,343	+		EFB2_03267	0.82	+0.7
3,415,343	+		EFB2_03267	0.82	-0.8
3,415,343	+		EFB2_03267	0.82	-1.1
3,415,343	+		EFB2_03267	0.82	+1.9
3,415,344	-		EFB2_03267	0.82	+1.2
3,415,344	-		EFB2_03267	0.82	+1.1
3,415,344	-		EFB2_03267	0.82	+0.9
3,415,344	-		EFB2_03267	0.82	-1.0
3,415,344	-		EFB2_03267	0.82	+2.0
3,415,344	-		EFB2_03267	0.82	-0.5
3,415,344	-		EFB2_03267	0.82	+0.4
3,415,344	-		EFB2_03267	0.82	+1.1
3,415,344	-		EFB2_03267	0.82	-0.9
3,415,344	-		EFB2_03267	0.82	+0.3
3,415,344	-		EFB2_03267	0.82	+0.5
3,415,344	-		EFB2_03267	0.82	-1.0
3,415,344	-		EFB2_03267	0.82	-0.6
3,415,344	-		EFB2_03267	0.82	-0.0
3,415,344	-		EFB2_03267	0.82	+0.3
3,415,344	-		EFB2_03267	0.82	+0.2
3,415,344	-		EFB2_03267	0.82	+0.2
3,415,359	+		EFB2_03267	0.83	-0.2
3,415,413	+		EFB2_03267	0.87	+2.6
3,415,413	+		EFB2_03267	0.87	+0.6
3,415,413	+		EFB2_03267	0.87	+0.5
3,415,424	+		EFB2_03267	0.88	-0.6
3,415,424	+		EFB2_03267	0.88	-0.3
3,415,425	-		EFB2_03267	0.88	-0.7
3,415,553	+				-2.2
3,415,553	+				+0.2
3,415,553	+				-2.0
3,415,553	+				+1.9
3,415,553	+				+2.2
3,415,553	+				-2.2
3,415,554	-				+1.4
3,415,554	-				+0.0
3,415,554	-				+2.8
3,415,554	-				-0.2
3,415,554	-				+0.2
3,415,563	+				-1.3
3,415,563	+				-1.4
3,415,563	+				+0.2
3,415,563	+				-0.8
3,415,564	-				+0.8
3,415,564	-				+0.1
3,415,564	-				+0.2
3,415,595	+				-0.2
3,415,596	-				+1.2
3,415,596	-				+3.0
3,415,596	-				-1.9
3,415,600	+				-2.1
3,415,600	+				-0.6
3,415,600	+				-0.5
3,415,600	+				-0.2
3,415,600	+				-2.8
3,415,600	+				-2.2
3,415,600	+				-1.8
3,415,600	+				+1.9
3,415,600	+				-2.4
3,415,600	+				+0.3
3,415,601	-				-1.1
3,415,601	-				-0.6
3,415,601	-				+0.9
3,415,601	-				-0.6
3,415,601	-				-0.1
3,415,601	-				-0.4
3,415,601	-				-2.1
3,415,601	-				+0.3
3,415,601	-				-1.2
3,415,601	-				+0.4
3,415,601	-				-1.5
3,415,601	-				-0.4
3,415,601	-				+0.8
3,415,601	-				-0.0
3,415,602	+				-1.3
3,415,603	-				+2.0
3,415,603	-				-0.1
3,415,603	-				-2.6
3,415,611	-				+2.3
3,415,611	-				+0.4
3,415,615	+				-0.8
3,415,615	+				-0.4
3,415,615	+				+0.7
3,415,616	-				-0.2
3,415,616	-				-1.4
3,415,628	+				+1.0
3,415,629	-				+0.5
3,415,629	-				+0.1
3,415,629	-				-2.3
3,415,631	+				-0.9
3,415,632	-				-0.5
3,415,648	+				-2.8
3,415,648	+				-1.5
3,415,659	+				+0.9
3,415,659	+				+2.2
3,415,659	+				-1.7
3,415,684	-				-1.1
3,415,690	+				-0.9
3,415,740	+				-0.9
3,415,740	+				+0.4
3,415,741	-				+0.4
3,415,747	+				+0.1
3,415,753	+				+1.2
3,415,753	+				+0.6
3,415,753	+				+0.6
3,415,753	+				+0.8
3,415,753	+				+0.5
3,415,754	-				+1.1
3,415,754	-				-1.2
3,415,754	-				+0.1
3,415,754	-				-1.0
3,415,809	+				+3.0
3,415,809	+				-0.9
3,415,809	+				-0.2
3,415,809	+				+1.0
3,415,809	+				-0.2
3,415,810	-				-0.6
3,415,810	-				+0.6
3,415,810	-				+0.8
3,415,810	-				-1.5
3,415,810	-				+0.8
3,415,810	-				+0.9
3,415,810	-				-1.2
3,415,810	-				-0.9
3,415,810	-				+0.6
3,415,810	-				-0.8
3,415,810	-				+0.2
3,415,810	-				-1.4
3,415,810	-				-2.0
3,415,815	+				+1.8
3,415,815	+				+0.5
3,415,815	+				-0.5
3,415,816	-				+1.1
3,415,816	-				+1.9
3,415,816	-				+0.6
3,415,816	-				+0.6
3,415,833	+				-1.2
3,415,833	+				+1.0
3,415,856	+				-0.2
3,415,883	+		EFB2_03268	0.12	+0.4
3,415,883	+		EFB2_03268	0.12	-0.2
3,415,883	+		EFB2_03268	0.12	+0.5
3,415,883	+		EFB2_03268	0.12	-1.6
3,415,883	+		EFB2_03268	0.12	+1.3
3,415,883	+		EFB2_03268	0.12	-1.4
3,415,883	+		EFB2_03268	0.12	-0.6
3,415,883	+		EFB2_03268	0.12	+0.5
3,415,883	+		EFB2_03268	0.12	-1.2
3,415,883	+		EFB2_03268	0.12	-0.5
3,415,883	+		EFB2_03268	0.12	-0.7
3,415,883	+		EFB2_03268	0.12	+0.3
3,415,883	+		EFB2_03268	0.12	+0.1
3,415,883	+		EFB2_03268	0.12	-1.9
3,415,883	+		EFB2_03268	0.12	-0.1
3,415,883	+		EFB2_03268	0.12	-0.5
3,415,883	+		EFB2_03268	0.12	+0.0
3,415,883	+		EFB2_03268	0.12	+0.8
3,415,884	-		EFB2_03268	0.12	-1.8
3,415,884	-		EFB2_03268	0.12	-0.4
3,415,884	-		EFB2_03268	0.12	-0.9
3,415,884	-		EFB2_03268	0.12	-1.7
3,415,884	-		EFB2_03268	0.12	-1.6
3,415,884	-		EFB2_03268	0.12	-0.4
3,415,884	-		EFB2_03268	0.12	+0.5
3,415,884	-		EFB2_03268	0.12	+0.4
3,415,884	-		EFB2_03268	0.12	-0.7
3,415,884	-		EFB2_03268	0.12	-0.1
3,415,884	-		EFB2_03268	0.12	+0.7
3,415,884	-		EFB2_03268	0.12	-0.6
3,415,884	-		EFB2_03268	0.12	+2.0
3,415,884	-		EFB2_03268	0.12	-0.1
3,415,884	-		EFB2_03268	0.12	+2.6
3,415,884	-		EFB2_03268	0.12	+0.4
3,415,888	+		EFB2_03268	0.12	-1.7
3,415,888	+		EFB2_03268	0.12	+0.3
3,415,888	+		EFB2_03268	0.12	+1.5
3,415,888	+		EFB2_03268	0.12	-0.5
3,415,889	-		EFB2_03268	0.13	-2.4
3,415,889	-		EFB2_03268	0.13	+0.0
3,416,029	+		EFB2_03268	0.35	+2.2
3,416,131	-		EFB2_03268	0.51	-2.1
3,416,159	+		EFB2_03268	0.56	+1.5
3,416,159	+		EFB2_03268	0.56	-0.1
3,416,159	+		EFB2_03268	0.56	+0.1
3,416,160	-		EFB2_03268	0.56	-0.1
3,416,261	+		EFB2_03268	0.72	-1.6
3,416,262	-		EFB2_03268	0.72	-0.5
3,416,320	+		EFB2_03268	0.81	+0.5
3,416,320	+		EFB2_03268	0.81	+0.4
3,416,320	+		EFB2_03268	0.81	-0.5
3,416,320	+		EFB2_03268	0.81	-1.2
3,416,321	-		EFB2_03268	0.81	+0.6
3,416,321	-		EFB2_03268	0.81	+1.2
3,416,331	+		EFB2_03268	0.83	-1.2
3,416,431	-				+1.0
3,416,434	+				-0.4
3,416,434	+				+0.9
3,416,434	+				-1.7
3,416,434	+				+0.4
3,416,434	+				+1.5
3,416,434	+				+1.8
3,416,434	+				-1.0
3,416,434	+				-2.2
3,416,434	+				-1.9
3,416,434	+				-0.2
3,416,435	-				+0.8
3,416,435	-				-1.6
3,416,435	-				+1.2
3,416,435	-				+0.3
3,416,435	-				+1.3
3,416,435	-				-0.4
3,416,435	-				+0.9
3,416,447	+				+1.3
3,416,448	-				-1.7
3,416,453	+				-0.8
3,416,453	+				-0.8
3,416,453	+				-0.7
3,416,453	+				-0.7
3,416,453	+				-1.3
3,416,454	-				+0.6
3,416,454	-				+1.0
3,416,454	-				-0.2
3,416,454	-				-0.0
3,416,454	-				+1.2
3,416,457	+				-2.3
3,416,457	+				-2.2
3,416,457	+				+1.0
3,416,457	+				-0.3
3,416,458	-				+1.6
3,416,458	-				+0.7
3,416,458	-				-0.2
3,416,458	-				-1.4
3,416,488	+				+0.3
3,416,488	+				-0.8
3,416,489	-				+2.6
3,416,489	-				+0.9
3,416,489	-				+0.3
3,416,489	-				+1.4
3,416,489	-				-1.4
3,416,490	+				-1.0
3,416,490	+				-0.3
3,416,490	+				-3.7
3,416,490	+				-0.8
3,416,490	+				+2.7
3,416,490	+				+1.1
3,416,491	-				-1.3
3,416,491	-				+0.4
3,416,491	-				+1.6
3,416,491	-				+0.4
3,416,491	-				-0.8
3,416,491	-				+0.6
3,416,491	-				-1.4
3,416,494	+				-0.9
3,416,495	-				+0.6
3,416,495	-				+1.9
3,416,495	-				-1.2
3,416,545	-		EFB2_03269	0.10	-0.4
3,416,603	+		EFB2_03269	0.15	-1.0
3,416,603	+		EFB2_03269	0.15	+0.2
3,416,603	+		EFB2_03269	0.15	-0.9
3,416,603	+		EFB2_03269	0.15	-2.8
3,416,604	-		EFB2_03269	0.15	+0.4
3,416,604	-		EFB2_03269	0.15	+0.9
3,416,604	-		EFB2_03269	0.15	+0.6
3,416,604	-		EFB2_03269	0.15	+0.4
3,416,604	-		EFB2_03269	0.15	+0.1
3,416,604	-		EFB2_03269	0.15	+1.6
3,416,625	+		EFB2_03269	0.17	+1.5
3,416,625	+		EFB2_03269	0.17	-1.3
3,416,626	-		EFB2_03269	0.17	-1.2
3,416,626	-		EFB2_03269	0.17	+0.9
3,416,652	-		EFB2_03269	0.20	+1.2
3,416,652	-		EFB2_03269	0.20	-0.9
3,416,660	+		EFB2_03269	0.20	-2.8
3,416,660	+		EFB2_03269	0.20	-1.2
3,416,660	+		EFB2_03269	0.20	-0.1
3,416,660	+		EFB2_03269	0.20	-1.2
3,416,661	-		EFB2_03269	0.20	-2.4
3,416,661	-		EFB2_03269	0.20	+1.1
3,416,661	-		EFB2_03269	0.20	-0.6
3,416,661	-		EFB2_03269	0.20	+0.6
3,416,662	+		EFB2_03269	0.21	-0.1
3,416,662	+		EFB2_03269	0.21	-1.6
3,416,662	+		EFB2_03269	0.21	-0.7
3,416,662	+		EFB2_03269	0.21	+1.5
3,416,662	+		EFB2_03269	0.21	-2.2
3,416,662	+		EFB2_03269	0.21	+1.7
3,416,663	-		EFB2_03269	0.21	+0.6
3,416,663	-		EFB2_03269	0.21	-0.5
3,416,663	-		EFB2_03269	0.21	+1.1
3,416,663	-		EFB2_03269	0.21	-0.5
3,416,663	-		EFB2_03269	0.21	-2.0
3,416,663	-		EFB2_03269	0.21	-0.9
3,416,663	-		EFB2_03269	0.21	-0.5
3,416,663	-		EFB2_03269	0.21	+1.7
3,416,663	-		EFB2_03269	0.21	-0.8
3,416,663	-		EFB2_03269	0.21	+0.8
3,416,663	-		EFB2_03269	0.21	-0.0
3,416,663	-		EFB2_03269	0.21	+0.1
3,416,663	-		EFB2_03269	0.21	+1.8
3,416,663	-		EFB2_03269	0.21	+1.6
3,416,751	+		EFB2_03269	0.28	-0.8
3,416,752	-		EFB2_03269	0.29	+0.3
3,416,756	+		EFB2_03269	0.29	-0.7
3,416,757	-		EFB2_03269	0.29	+2.2
3,416,757	-		EFB2_03269	0.29	-0.8
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