Strain Fitness in Escherichia fergusonii Becca around EFB2_01581

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
1,653,399	+		EFB2_01578	0.80	-0.8
1,653,408	+		EFB2_01578	0.81	+1.6
1,653,409	-		EFB2_01578	0.81	-0.1
1,653,410	+		EFB2_01578	0.82	+1.0
1,653,410	+		EFB2_01578	0.82	+2.6
1,653,410	+		EFB2_01578	0.82	-2.2
1,653,410	+		EFB2_01578	0.82	-1.9
1,653,410	+		EFB2_01578	0.82	+2.2
1,653,411	-		EFB2_01578	0.82	+0.3
1,653,411	-		EFB2_01578	0.82	-1.4
1,653,417	+		EFB2_01578	0.83	+1.3
1,653,431	+		EFB2_01578	0.85	-0.9
1,653,432	-		EFB2_01578	0.86	-2.1
1,653,452	+		EFB2_01578	0.89	+1.9
1,653,536	+				-0.2
1,653,536	+				+0.5
1,653,536	+				+0.2
1,653,536	+				+0.1
1,653,536	+				-2.7
1,653,537	-				+2.1
1,653,537	-				+2.0
1,653,537	-				+0.8
1,653,537	-				-0.8
1,653,538	+				-0.4
1,653,538	+				-0.6
1,653,538	+				+2.8
1,653,539	-				+0.4
1,653,552	+				+0.6
1,653,558	+				-1.1
1,653,558	+				-2.0
1,653,558	+				+0.7
1,653,558	+				-1.7
1,653,558	+				-0.9
1,653,558	+				+1.2
1,653,558	+				-2.2
1,653,558	+				+4.4
1,653,558	+				-0.7
1,653,558	+				+1.9
1,653,559	-				+1.0
1,653,559	-				-1.9
1,653,559	-				+0.1
1,653,559	-				-1.6
1,653,559	-				-2.3
1,653,559	-				+0.2
1,653,559	-				-1.7
1,653,559	-				+0.6
1,653,586	+		EFB2_01579	0.12	+0.3
1,653,611	+		EFB2_01579	0.16	-1.6
1,653,611	+		EFB2_01579	0.16	+0.6
1,653,612	-		EFB2_01579	0.16	+1.7
1,653,619	+		EFB2_01579	0.18	+4.8
1,653,619	+		EFB2_01579	0.18	-1.2
1,653,620	-		EFB2_01579	0.18	+2.2
1,653,665	+		EFB2_01579	0.26	-0.9
1,653,665	+		EFB2_01579	0.26	+0.1
1,653,665	+		EFB2_01579	0.26	-0.8
1,653,665	+		EFB2_01579	0.26	+0.1
1,653,688	+		EFB2_01579	0.30	+0.6
1,653,688	+		EFB2_01579	0.30	+3.0
1,653,695	+		EFB2_01579	0.31	+2.2
1,653,710	-		EFB2_01579	0.34	+2.6
1,653,710	-		EFB2_01579	0.34	-1.9
1,653,845	+		EFB2_01579	0.58	+0.6
1,653,875	-		EFB2_01579	0.64	+4.2
1,653,898	+		EFB2_01579	0.68	-2.5
1,653,898	+		EFB2_01579	0.68	-0.6
1,653,899	-		EFB2_01579	0.68	-0.4
1,653,899	-		EFB2_01579	0.68	+0.2
1,653,910	+		EFB2_01579	0.70	+0.1
1,653,911	-		EFB2_01579	0.70	-0.4
1,653,911	-		EFB2_01579	0.70	-1.9
1,653,913	+		EFB2_01579	0.71	-0.6
1,653,913	+		EFB2_01579	0.71	-0.1
1,653,913	+		EFB2_01579	0.71	+2.8
1,653,933	+		EFB2_01579	0.74	-0.5
1,653,933	+		EFB2_01579	0.74	-0.9
1,653,933	+		EFB2_01579	0.74	+0.5
1,653,933	+		EFB2_01579	0.74	-0.4
1,653,933	+		EFB2_01579	0.74	-1.8
1,653,955	+		EFB2_01579	0.78	-1.2
1,653,955	+		EFB2_01579	0.78	+1.4
1,653,955	+		EFB2_01579	0.78	+0.1
1,653,955	+		EFB2_01579	0.78	+1.6
1,653,955	+		EFB2_01579	0.78	-0.6
1,653,955	+		EFB2_01579	0.78	+0.3
1,653,955	+		EFB2_01579	0.78	-1.5
1,653,955	+		EFB2_01579	0.78	-0.8
1,653,955	+		EFB2_01579	0.78	+0.2
1,653,955	+		EFB2_01579	0.78	-1.8
1,653,956	-		EFB2_01579	0.78	-0.0
1,653,956	-		EFB2_01579	0.78	-1.1
1,653,956	-		EFB2_01579	0.78	+1.5
1,653,956	-		EFB2_01579	0.78	+1.7
1,653,956	-		EFB2_01579	0.78	-0.6
1,653,956	-		EFB2_01579	0.78	+1.0
1,653,956	-		EFB2_01579	0.78	-0.9
1,653,956	-		EFB2_01579	0.78	-0.6
1,653,956	-		EFB2_01579	0.78	-0.8
1,653,956	-		EFB2_01579	0.78	-1.3
1,653,956	-		EFB2_01579	0.78	+3.7
1,654,082	+				-0.1
1,654,083	-				-1.9
1,654,083	-				-0.6
1,654,113	-		EFB2_01580	0.14	-1.7
1,654,161	+		EFB2_01580	0.29	-0.9
1,654,162	-		EFB2_01580	0.30	+0.6
1,654,162	-		EFB2_01580	0.30	-0.1
1,654,225	+		EFB2_01580	0.50	-0.1
1,654,225	+		EFB2_01580	0.50	+0.3
1,654,226	-		EFB2_01580	0.51	+4.6
1,654,226	-		EFB2_01580	0.51	+0.6
1,654,226	-		EFB2_01580	0.51	-0.4
1,654,226	-		EFB2_01580	0.51	+0.2
1,654,255	+		EFB2_01580	0.60	-0.3
1,654,255	+		EFB2_01580	0.60	+1.8
1,654,255	+		EFB2_01580	0.60	+1.1
1,654,255	+		EFB2_01580	0.60	+2.5
1,654,255	+		EFB2_01580	0.60	-1.6
1,654,255	+		EFB2_01580	0.60	+1.6
1,654,256	-		EFB2_01580	0.61	+0.9
1,654,256	-		EFB2_01580	0.61	+0.6
1,654,256	-		EFB2_01580	0.61	-2.5
1,654,256	-		EFB2_01580	0.61	-0.6
1,654,355	+				+0.5
1,654,388	-				+1.4
1,654,394	+				+1.2
1,654,394	+				+2.5
1,654,395	-				-2.0
1,654,548	+				-0.2
1,654,548	+				+1.1
1,654,548	+				-1.1
1,654,548	+				-0.9
1,654,549	-				-1.7
1,654,549	-				+0.9
1,654,549	-				-0.9
1,654,589	+		EFB2_01581	0.12	+0.6
1,654,590	-		EFB2_01581	0.12	+1.2
1,654,601	+		EFB2_01581	0.12	-1.5
1,654,601	+		EFB2_01581	0.12	-0.1
1,654,602	-		EFB2_01581	0.13	+0.2
1,654,665	-		EFB2_01581	0.16	+0.6
1,654,674	+		EFB2_01581	0.16	+1.3
1,654,674	+		EFB2_01581	0.16	-0.9
1,654,674	+		EFB2_01581	0.16	+0.1
1,654,674	+		EFB2_01581	0.16	+1.6
1,654,674	+		EFB2_01581	0.16	+1.6
1,654,674	+		EFB2_01581	0.16	+0.6
1,654,674	+		EFB2_01581	0.16	-0.0
1,654,674	+		EFB2_01581	0.16	+2.8
1,654,674	+		EFB2_01581	0.16	+2.0
1,654,674	+		EFB2_01581	0.16	+2.5
1,654,674	+		EFB2_01581	0.16	+0.6
1,654,674	+		EFB2_01581	0.16	+0.6
1,654,674	+		EFB2_01581	0.16	-1.4
1,654,674	+		EFB2_01581	0.16	-0.9
1,654,674	+		EFB2_01581	0.16	+1.0
1,654,674	+		EFB2_01581	0.16	+1.2
1,654,674	+		EFB2_01581	0.16	-0.8
1,654,675	-		EFB2_01581	0.17	-0.4
1,654,675	-		EFB2_01581	0.17	+0.7
1,654,675	-		EFB2_01581	0.17	+0.2
1,654,675	-		EFB2_01581	0.17	+0.8
1,654,675	-		EFB2_01581	0.17	+1.2
1,654,675	-		EFB2_01581	0.17	-1.9
1,654,675	-		EFB2_01581	0.17	-1.7
1,654,675	-		EFB2_01581	0.17	-0.9
1,654,675	-		EFB2_01581	0.17	-0.4
1,654,686	+		EFB2_01581	0.17	+0.6
1,654,686	+		EFB2_01581	0.17	+0.6
1,654,686	+		EFB2_01581	0.17	-2.4
1,654,686	+		EFB2_01581	0.17	+0.7
1,654,686	+		EFB2_01581	0.17	+0.8
1,654,686	+		EFB2_01581	0.17	+0.1
1,654,686	+		EFB2_01581	0.17	+2.2
1,654,686	+		EFB2_01581	0.17	-0.1
1,654,687	-		EFB2_01581	0.17	-1.2
1,654,687	-		EFB2_01581	0.17	-0.9
1,654,688	+		EFB2_01581	0.17	+0.0
1,654,688	+		EFB2_01581	0.17	-1.2
1,654,688	+		EFB2_01581	0.17	-0.1
1,654,688	+		EFB2_01581	0.17	+1.0
1,654,688	+		EFB2_01581	0.17	-1.4
1,654,688	+		EFB2_01581	0.17	-1.4
1,654,707	+		EFB2_01581	0.18	+1.0
1,654,708	-		EFB2_01581	0.18	-1.5
1,654,708	-		EFB2_01581	0.18	+0.1
1,654,708	-		EFB2_01581	0.18	-2.0
1,654,725	+		EFB2_01581	0.19	+0.2
1,654,726	-		EFB2_01581	0.19	+3.2
1,654,753	+		EFB2_01581	0.21	+1.6
1,654,753	+		EFB2_01581	0.21	-0.4
1,654,753	+		EFB2_01581	0.21	-0.6
1,654,753	+		EFB2_01581	0.21	-0.6
1,654,753	+		EFB2_01581	0.21	-1.6
1,654,754	-		EFB2_01581	0.21	-2.0
1,654,754	-		EFB2_01581	0.21	-0.9
1,654,788	+		EFB2_01581	0.23	-1.9
1,654,788	+		EFB2_01581	0.23	-0.9
1,654,788	+		EFB2_01581	0.23	+0.8
1,654,788	+		EFB2_01581	0.23	-0.6
1,654,789	-		EFB2_01581	0.23	+0.4
1,654,789	-		EFB2_01581	0.23	-1.4
1,654,789	-		EFB2_01581	0.23	-2.1
1,654,789	-		EFB2_01581	0.23	-1.4
1,654,789	-		EFB2_01581	0.23	-0.0
1,654,789	-		EFB2_01581	0.23	+1.2
1,654,789	-		EFB2_01581	0.23	-1.6
1,654,821	+		EFB2_01581	0.24	+0.6
1,654,821	+		EFB2_01581	0.24	+0.2
1,654,821	+		EFB2_01581	0.24	+0.5
1,654,822	-		EFB2_01581	0.24	+2.2
1,654,822	-		EFB2_01581	0.24	+1.9
1,654,839	+		EFB2_01581	0.25	-0.3
1,654,839	+		EFB2_01581	0.25	-0.1
1,654,842	+		EFB2_01581	0.26	-0.5
1,654,842	+		EFB2_01581	0.26	+0.9
1,654,842	+		EFB2_01581	0.26	-0.4
1,654,842	+		EFB2_01581	0.26	-0.9
1,654,843	-		EFB2_01581	0.26	-0.6
1,654,843	-		EFB2_01581	0.26	-0.3
1,654,935	+		EFB2_01581	0.31	+2.2
1,654,935	+		EFB2_01581	0.31	-0.9
1,654,935	+		EFB2_01581	0.31	-0.6
1,654,936	-		EFB2_01581	0.31	+2.6
1,654,936	-		EFB2_01581	0.31	+0.2
1,654,936	-		EFB2_01581	0.31	+2.7
1,655,006	+		EFB2_01581	0.34	+0.7
1,655,006	+		EFB2_01581	0.34	-0.6
1,655,007	-		EFB2_01581	0.35	+4.0
1,655,160	+		EFB2_01581	0.43	-1.5
1,655,160	+		EFB2_01581	0.43	+1.7
1,655,160	+		EFB2_01581	0.43	+0.5
1,655,269	+		EFB2_01581	0.49	-0.7
1,655,298	+		EFB2_01581	0.50	-1.2
1,655,303	+		EFB2_01581	0.51	+0.8
1,655,303	+		EFB2_01581	0.51	+3.6
1,655,304	-		EFB2_01581	0.51	-1.6
1,655,322	+		EFB2_01581	0.52	-0.2
1,655,322	+		EFB2_01581	0.52	+1.6
1,655,322	+		EFB2_01581	0.52	-0.8
1,655,322	+		EFB2_01581	0.52	-0.6
1,655,322	+		EFB2_01581	0.52	+1.4
1,655,322	+		EFB2_01581	0.52	-1.2
1,655,323	-		EFB2_01581	0.52	+1.2
1,655,323	-		EFB2_01581	0.52	+2.0
1,655,459	+		EFB2_01581	0.59	-1.9
1,655,459	+		EFB2_01581	0.59	-0.9
1,655,459	+		EFB2_01581	0.59	+0.5
1,655,460	-		EFB2_01581	0.59	-0.4
1,655,460	-		EFB2_01581	0.59	+0.6
1,655,483	+		EFB2_01581	0.60	-0.9
1,655,483	+		EFB2_01581	0.60	-1.5
1,655,496	+		EFB2_01581	0.61	+2.5
1,655,496	+		EFB2_01581	0.61	-0.9
1,655,497	-		EFB2_01581	0.61	-0.9
1,655,497	-		EFB2_01581	0.61	+0.7
1,655,603	+		EFB2_01581	0.67	+0.6
1,655,603	+		EFB2_01581	0.67	-1.1
1,655,603	+		EFB2_01581	0.67	-0.9
1,655,603	+		EFB2_01581	0.67	-0.4
1,655,603	+		EFB2_01581	0.67	+2.2
1,655,603	+		EFB2_01581	0.67	+2.6
1,655,603	+		EFB2_01581	0.67	-0.6
1,655,603	+		EFB2_01581	0.67	+1.6
1,655,603	+		EFB2_01581	0.67	+0.2
1,655,603	+		EFB2_01581	0.67	-0.9
1,655,603	+		EFB2_01581	0.67	-0.8
1,655,603	+		EFB2_01581	0.67	+1.2
1,655,603	+		EFB2_01581	0.67	+1.5
1,655,603	+		EFB2_01581	0.67	+0.5
1,655,603	+		EFB2_01581	0.67	-0.1
1,655,604	-		EFB2_01581	0.67	+1.2
1,655,604	-		EFB2_01581	0.67	+0.6
1,655,604	-		EFB2_01581	0.67	+0.2
1,655,604	-		EFB2_01581	0.67	+0.6
1,655,604	-		EFB2_01581	0.67	+0.6
1,655,604	-		EFB2_01581	0.67	+1.8
1,655,604	-		EFB2_01581	0.67	+0.6
1,655,639	+		EFB2_01581	0.69	+1.2
1,655,639	+		EFB2_01581	0.69	-1.4
1,655,640	-		EFB2_01581	0.69	-0.4
1,655,652	+		EFB2_01581	0.70	-0.1
1,655,785	+		EFB2_01581	0.77	-0.4
1,655,785	+		EFB2_01581	0.77	-1.7
1,655,918	+		EFB2_01581	0.84	+0.6
1,655,918	+		EFB2_01581	0.84	-1.6
1,655,918	+		EFB2_01581	0.84	+1.6
1,655,918	+		EFB2_01581	0.84	+0.2
1,655,918	+		EFB2_01581	0.84	-0.1
1,655,918	+		EFB2_01581	0.84	-1.7
1,655,918	+		EFB2_01581	0.84	+1.2
1,655,918	+		EFB2_01581	0.84	-1.1
1,655,919	-		EFB2_01581	0.84	+0.2
1,655,919	-		EFB2_01581	0.84	+1.6
1,655,919	-		EFB2_01581	0.84	-0.1
1,655,919	-		EFB2_01581	0.84	+1.5
1,655,919	-		EFB2_01581	0.84	-1.6
1,655,976	+		EFB2_01581	0.87	+2.2
1,655,976	+		EFB2_01581	0.87	-0.1
1,655,977	-		EFB2_01581	0.87	-0.6
1,655,977	-		EFB2_01581	0.87	-0.1
1,656,003	+		EFB2_01581	0.89	+0.2
1,656,004	-		EFB2_01581	0.89	-0.8
1,656,004	-		EFB2_01581	0.89	-1.9
1,656,036	-				+2.8
1,656,110	+				+2.2
1,656,111	-				-1.7
1,656,111	-				+2.1
1,656,150	+				-1.9
1,656,150	+				+0.2
1,656,150	+				-0.1
1,656,150	+				-0.6
1,656,150	+				+2.6
1,656,150	+				+1.2
1,656,150	+				-0.5
1,656,150	+				+0.1
1,656,151	-				+2.2
1,656,151	-				-0.9
1,656,151	-				+2.1
1,656,151	-				-0.4
1,656,151	-				-0.9
1,656,151	-				-0.4
1,656,202	+				+0.6
1,656,202	+				-1.6
1,656,203	-				+2.9
1,656,203	-				+2.2
1,656,215	+				+0.3
1,656,215	+				-0.1
1,656,216	-				-1.6
1,656,216	-				-0.1
1,656,216	-				-1.1
1,656,242	+				+0.7
1,656,242	+				-0.0
1,656,242	+				-1.7
1,656,242	+				-0.9
1,656,242	+				-0.0
1,656,242	+				-1.6
1,656,242	+				+0.4
1,656,242	+				-1.6
1,656,242	+				+0.3
1,656,242	+				-2.5
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1,656,242	+				+4.2
1,656,243	-				-0.4
1,656,243	-				+0.9
1,656,243	-				+1.4
1,656,244	+				-0.4
1,656,244	+				-0.5
1,656,244	+				+2.2
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1,656,244	+				+2.8
1,656,244	+				-0.9
1,656,244	+				-1.7
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1,656,244	+				-0.8
1,656,244	+				-2.2
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1,656,244	+				+0.4
1,656,244	+				+0.3
1,656,244	+				+1.3
1,656,244	+				-2.9
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1,656,245	-				-0.6
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1,656,245	-				+1.0
1,656,245	-				-0.6
1,656,245	-				+0.6
1,656,245	-				-1.4
1,656,245	-				+1.7
1,656,245	-				+0.8
1,656,245	-				+0.6
1,656,245	-				-2.6
1,656,245	-				-1.2
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1,656,245	-				+0.1
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1,656,245	-				-1.5
1,656,252	+				-0.1
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1,656,252	+				+0.8
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1,656,252	+				-1.9
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1,656,252	+				-0.7
1,656,252	+				+2.2
1,656,252	+				-0.3
1,656,253	-				+2.6
1,656,253	-				+2.2
1,656,253	-				+1.8
1,656,253	-				+2.9
1,656,253	-				-1.1
1,656,289	+				+1.0
1,656,356	+				+0.2
1,656,356	+				-1.1
1,656,365	+				-1.9
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1,656,381	-				-1.6
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1,656,396	-				+0.2
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1,656,399	-				-2.6
1,656,399	-				+5.0
1,656,476	+				-0.1
1,656,477	-				+0.6
1,656,604	-		EFB2_01582	0.15	-0.7
1,656,609	+		EFB2_01582	0.15	-0.9
1,656,681	-		EFB2_01582	0.20	-1.2
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1,656,826	+		EFB2_01582	0.29	+1.0
1,656,827	-		EFB2_01582	0.29	+0.8
1,656,827	-		EFB2_01582	0.29	-0.6
1,656,827	-		EFB2_01582	0.29	+3.3
1,656,827	-		EFB2_01582	0.29	-1.5
1,656,852	+		EFB2_01582	0.31	+1.6
1,656,852	+		EFB2_01582	0.31	+2.2
1,656,867	+		EFB2_01582	0.32	-2.0
1,656,905	-		EFB2_01582	0.35	+1.0
1,656,905	-		EFB2_01582	0.35	+0.2
1,656,964	+		EFB2_01582	0.38	-0.8
1,656,965	-		EFB2_01582	0.38	-1.2
1,656,965	-		EFB2_01582	0.38	-0.4
1,656,965	-		EFB2_01582	0.38	+1.4
1,656,994	+		EFB2_01582	0.40	+1.2
1,656,994	+		EFB2_01582	0.40	+1.0
1,656,994	+		EFB2_01582	0.40	+0.5
1,656,995	-		EFB2_01582	0.40	+0.5
1,656,995	-		EFB2_01582	0.40	+1.7
1,657,011	+		EFB2_01582	0.42	-2.5
1,657,012	-		EFB2_01582	0.42	-2.4
1,657,023	+		EFB2_01582	0.42	+5.0
1,657,036	+		EFB2_01582	0.43	-1.2
1,657,036	+		EFB2_01582	0.43	+0.9
1,657,037	-		EFB2_01582	0.43	-2.5
1,657,181	-		EFB2_01582	0.53	+1.5