Strain Fitness in Escherichia fergusonii Becca around EFB2_00191

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEFB2_00190 and EFB2_00191 are separated by 3 nucleotidesEFB2_00191 and EFB2_00192 are separated by 9 nucleotides EFB2_00190: EFB2_00190 - Lipopolysaccharide heptosyltransferase 1, at 179,632 to 180,612 _00190 EFB2_00191: EFB2_00191 - ADP-heptose--LPS heptosyltransferase 2, at 180,616 to 181,662 _00191 EFB2_00192: EFB2_00192 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 181,672 to 182,604 _00192 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 179.628 kb on + strandat 179.676 kb on + strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.638 kb on - strandat 180.638 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.659 kb on - strandat 182.659 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
remove
179,628 + +3.0
179,676 + -1.1
180,632 - +0.5
180,632 - -1.7
180,632 - -1.0
180,632 - +0.6
180,638 - +0.3
180,638 - -2.5
181,674 - -3.3
181,674 - +1.3
181,674 - -2.1
181,674 - -0.0
181,674 - -0.9
181,674 - -0.4
181,674 - +1.0
181,674 - -2.2
181,674 - -2.4
182,653 - -2.3
182,653 - +0.9
182,653 - +3.7
182,653 - -3.3
182,659 - +1.4
182,659 - +0.6

Or see this region's nucleotide sequence