Experiment: supernatant control; LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pal and ybgF are separated by 6 nucleotides ybgF and queE are separated by 158 nucleotides queE and queC are separated by 13 nucleotides queC and COO64_RS20150 are separated by 61 nucleotides COO64_RS20150 and COO64_RS20155 are separated by 134 nucleotides
COO64_RS20130: pal - peptidoglycan-associated lipoprotein Pal, at 129,810 to 130,307
pal
COO64_RS20135: ybgF - tol-pal system protein YbgF, at 130,314 to 131,144
ybgF
COO64_RS20140: queE - 7-carboxy-7-deazaguanine synthase QueE, at 131,303 to 131,950
queE
COO64_RS20145: queC - 7-cyano-7-deazaguanine synthase QueC, at 131,964 to 132,638
queC
COO64_RS20150: COO64_RS20150 - tRNA-Lys, at 132,700 to 132,775
_RS20150
COO64_RS20155: COO64_RS20155 - TonB-dependent siderophore receptor, at 132,910 to 135,123
_RS20155
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1 at 130.305 kb on + strand at 130.306 kb on - strand at 130.306 kb on - strand at 130.336 kb on + strand at 130.407 kb on + strand, within ybgF at 130.408 kb on - strand, within ybgF at 130.408 kb on - strand, within ybgF at 130.409 kb on + strand, within ybgF at 130.440 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.579 kb on + strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.580 kb on - strand, within ybgF at 130.645 kb on + strand, within ybgF at 130.645 kb on + strand, within ybgF at 130.645 kb on + strand, within ybgF at 130.645 kb on + strand, within ybgF at 130.645 kb on + strand, within ybgF at 130.646 kb on - strand, within ybgF at 130.646 kb on - strand, within ybgF at 130.646 kb on - strand, within ybgF at 130.788 kb on + strand, within ybgF at 130.789 kb on - strand, within ybgF at 130.789 kb on - strand, within ybgF at 130.791 kb on + strand, within ybgF at 130.791 kb on + strand, within ybgF at 130.792 kb on - strand, within ybgF at 130.792 kb on - strand, within ybgF at 130.870 kb on - strand, within ybgF at 130.870 kb on - strand, within ybgF at 130.884 kb on + strand, within ybgF at 130.885 kb on - strand, within ybgF at 130.919 kb on - strand, within ybgF at 130.980 kb on + strand, within ybgF at 130.981 kb on - strand, within ybgF at 130.981 kb on - strand, within ybgF at 131.013 kb on + strand, within ybgF at 131.013 kb on + strand, within ybgF at 131.013 kb on + strand, within ybgF at 131.014 kb on - strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.029 kb on + strand, within ybgF at 131.030 kb on - strand, within ybgF at 131.030 kb on - strand, within ybgF at 131.030 kb on - strand, within ybgF at 131.030 kb on - strand, within ybgF at 131.209 kb on - strand at 131.230 kb on + strand at 131.280 kb on + strand at 131.280 kb on + strand at 131.280 kb on + strand at 131.281 kb on - strand at 131.281 kb on - strand at 131.281 kb on - strand at 131.302 kb on + strand at 131.302 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.316 kb on + strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.317 kb on - strand at 131.320 kb on + strand at 131.320 kb on + strand at 131.320 kb on + strand at 131.320 kb on + strand at 131.321 kb on - strand at 131.321 kb on - strand at 131.417 kb on + strand, within queE at 131.432 kb on + strand, within queE at 131.432 kb on + strand, within queE at 131.433 kb on - strand, within queE at 131.433 kb on - strand, within queE at 131.493 kb on - strand, within queE at 131.493 kb on - strand, within queE at 131.493 kb on - strand, within queE at 131.504 kb on + strand, within queE at 131.583 kb on - strand, within queE at 131.618 kb on - strand, within queE at 131.618 kb on - strand, within queE at 131.743 kb on + strand, within queE at 131.744 kb on - strand, within queE at 131.762 kb on + strand, within queE at 131.762 kb on + strand, within queE at 131.762 kb on + strand, within queE at 131.763 kb on - strand, within queE at 131.763 kb on - strand, within queE at 131.983 kb on + strand at 132.046 kb on - strand, within queC at 132.046 kb on - strand, within queC at 132.046 kb on - strand, within queC at 132.047 kb on + strand, within queC at 132.047 kb on + strand, within queC at 132.047 kb on + strand, within queC at 132.047 kb on + strand, within queC at 132.047 kb on + strand, within queC at 132.047 kb on + strand, within queC at 132.048 kb on - strand, within queC at 132.048 kb on - strand, within queC at 132.048 kb on - strand, within queC at 132.054 kb on + strand, within queC at 132.054 kb on + strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.055 kb on - strand, within queC at 132.170 kb on + strand, within queC at 132.209 kb on - strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.243 kb on + strand, within queC at 132.244 kb on - strand, within queC at 132.244 kb on - strand, within queC at 132.244 kb on - strand, within queC at 132.260 kb on + strand, within queC at 132.260 kb on + strand, within queC at 132.260 kb on + strand, within queC at 132.261 kb on - strand, within queC at 132.261 kb on - strand, within queC at 132.315 kb on - strand, within queC at 132.342 kb on + strand, within queC at 132.343 kb on - strand, within queC at 132.510 kb on + strand, within queC at 132.511 kb on - strand, within queC at 132.531 kb on + strand, within queC at 132.613 kb on + strand at 132.749 kb on + strand, within COO64_RS20150 at 132.749 kb on + strand, within COO64_RS20150 at 132.749 kb on + strand, within COO64_RS20150 at 132.776 kb on + strand at 132.776 kb on + strand at 132.776 kb on + strand at 132.783 kb on + strand at 132.783 kb on + strand at 132.860 kb on - strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.870 kb on + strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.871 kb on - strand at 132.904 kb on + strand at 132.904 kb on + strand at 132.904 kb on + strand at 132.905 kb on - strand at 132.905 kb on - strand at 132.905 kb on - strand at 132.905 kb on - strand at 132.920 kb on + strand at 132.920 kb on + strand at 132.920 kb on + strand at 132.921 kb on - strand at 132.921 kb on - strand at 132.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control; LB remove 130,305 + -0.9 130,306 - -1.8 130,306 - -1.9 130,336 + +0.5 130,407 + ybgF COO64_RS20135 0.11 -0.7 130,408 - ybgF COO64_RS20135 0.11 -0.4 130,408 - ybgF COO64_RS20135 0.11 -0.1 130,409 + ybgF COO64_RS20135 0.11 -2.2 130,440 + ybgF COO64_RS20135 0.15 +0.9 130,579 + ybgF COO64_RS20135 0.32 +0.0 130,579 + ybgF COO64_RS20135 0.32 -0.1 130,579 + ybgF COO64_RS20135 0.32 -1.0 130,579 + ybgF COO64_RS20135 0.32 +0.1 130,579 + ybgF COO64_RS20135 0.32 -1.3 130,579 + ybgF COO64_RS20135 0.32 -1.1 130,580 - ybgF COO64_RS20135 0.32 +0.1 130,580 - ybgF COO64_RS20135 0.32 -0.1 130,580 - ybgF COO64_RS20135 0.32 -1.5 130,580 - ybgF COO64_RS20135 0.32 +0.1 130,580 - ybgF COO64_RS20135 0.32 +0.2 130,580 - ybgF COO64_RS20135 0.32 +0.7 130,580 - ybgF COO64_RS20135 0.32 -0.7 130,580 - ybgF COO64_RS20135 0.32 +0.2 130,580 - ybgF COO64_RS20135 0.32 +0.2 130,580 - ybgF COO64_RS20135 0.32 +0.1 130,645 + ybgF COO64_RS20135 0.40 -0.7 130,645 + ybgF COO64_RS20135 0.40 +0.1 130,645 + ybgF COO64_RS20135 0.40 +0.5 130,645 + ybgF COO64_RS20135 0.40 +0.3 130,645 + ybgF COO64_RS20135 0.40 +0.6 130,646 - ybgF COO64_RS20135 0.40 -1.1 130,646 - ybgF COO64_RS20135 0.40 +0.6 130,646 - ybgF COO64_RS20135 0.40 -0.3 130,788 + ybgF COO64_RS20135 0.57 -0.0 130,789 - ybgF COO64_RS20135 0.57 -1.5 130,789 - ybgF COO64_RS20135 0.57 +0.3 130,791 + ybgF COO64_RS20135 0.57 -0.1 130,791 + ybgF COO64_RS20135 0.57 +0.5 130,792 - ybgF COO64_RS20135 0.58 -0.0 130,792 - ybgF COO64_RS20135 0.58 +0.2 130,870 - ybgF COO64_RS20135 0.67 +0.6 130,870 - ybgF COO64_RS20135 0.67 +0.7 130,884 + ybgF COO64_RS20135 0.69 -0.2 130,885 - ybgF COO64_RS20135 0.69 +1.2 130,919 - ybgF COO64_RS20135 0.73 +0.2 130,980 + ybgF COO64_RS20135 0.80 +0.8 130,981 - ybgF COO64_RS20135 0.80 -0.5 130,981 - ybgF COO64_RS20135 0.80 +0.3 131,013 + ybgF COO64_RS20135 0.84 -0.5 131,013 + ybgF COO64_RS20135 0.84 +0.9 131,013 + ybgF COO64_RS20135 0.84 -0.3 131,014 - ybgF COO64_RS20135 0.84 -0.2 131,029 + ybgF COO64_RS20135 0.86 +0.1 131,029 + ybgF COO64_RS20135 0.86 -1.1 131,029 + ybgF COO64_RS20135 0.86 -1.4 131,029 + ybgF COO64_RS20135 0.86 -0.7 131,029 + ybgF COO64_RS20135 0.86 +0.9 131,029 + ybgF COO64_RS20135 0.86 -0.3 131,030 - ybgF COO64_RS20135 0.86 -0.1 131,030 - ybgF COO64_RS20135 0.86 +1.0 131,030 - ybgF COO64_RS20135 0.86 -0.7 131,030 - ybgF COO64_RS20135 0.86 -0.9 131,209 - +0.3 131,230 + -1.9 131,280 + +0.3 131,280 + -0.3 131,280 + -0.5 131,281 - -0.7 131,281 - +0.1 131,281 - -0.7 131,302 + -0.7 131,302 + +0.3 131,316 + -0.1 131,316 + -0.1 131,316 + -1.5 131,316 + +1.5 131,316 + -0.3 131,316 + -0.4 131,316 + +0.5 131,316 + +0.9 131,317 - +0.3 131,317 - -0.7 131,317 - +0.1 131,317 - -0.2 131,317 - -0.1 131,317 - +1.3 131,317 - +1.3 131,317 - +0.9 131,317 - -0.4 131,317 - +0.3 131,317 - -1.0 131,317 - +0.3 131,320 + -0.0 131,320 + -0.4 131,320 + +0.3 131,320 + -0.9 131,321 - -0.1 131,321 - +1.5 131,417 + queE COO64_RS20140 0.18 -1.1 131,432 + queE COO64_RS20140 0.20 -0.3 131,432 + queE COO64_RS20140 0.20 +0.1 131,433 - queE COO64_RS20140 0.20 -1.2 131,433 - queE COO64_RS20140 0.20 +1.6 131,493 - queE COO64_RS20140 0.29 -0.5 131,493 - queE COO64_RS20140 0.29 -0.2 131,493 - queE COO64_RS20140 0.29 -0.8 131,504 + queE COO64_RS20140 0.31 -0.0 131,583 - queE COO64_RS20140 0.43 +0.2 131,618 - queE COO64_RS20140 0.49 -0.9 131,618 - queE COO64_RS20140 0.49 -0.1 131,743 + queE COO64_RS20140 0.68 -0.1 131,744 - queE COO64_RS20140 0.68 -0.0 131,762 + queE COO64_RS20140 0.71 -0.4 131,762 + queE COO64_RS20140 0.71 +1.3 131,762 + queE COO64_RS20140 0.71 +0.3 131,763 - queE COO64_RS20140 0.71 -1.1 131,763 - queE COO64_RS20140 0.71 -0.1 131,983 + -0.4 132,046 - queC COO64_RS20145 0.12 -0.4 132,046 - queC COO64_RS20145 0.12 +0.3 132,046 - queC COO64_RS20145 0.12 +0.3 132,047 + queC COO64_RS20145 0.12 +0.1 132,047 + queC COO64_RS20145 0.12 +0.5 132,047 + queC COO64_RS20145 0.12 -0.6 132,047 + queC COO64_RS20145 0.12 -2.1 132,047 + queC COO64_RS20145 0.12 -0.4 132,047 + queC COO64_RS20145 0.12 -1.5 132,048 - queC COO64_RS20145 0.12 -1.0 132,048 - queC COO64_RS20145 0.12 -0.8 132,048 - queC COO64_RS20145 0.12 +0.8 132,054 + queC COO64_RS20145 0.13 -1.1 132,054 + queC COO64_RS20145 0.13 -1.8 132,055 - queC COO64_RS20145 0.13 +0.1 132,055 - queC COO64_RS20145 0.13 -0.8 132,055 - queC COO64_RS20145 0.13 -0.0 132,055 - queC COO64_RS20145 0.13 +0.3 132,055 - queC COO64_RS20145 0.13 -0.9 132,055 - queC COO64_RS20145 0.13 -1.4 132,055 - queC COO64_RS20145 0.13 +0.3 132,170 + queC COO64_RS20145 0.31 +0.4 132,209 - queC COO64_RS20145 0.36 +0.3 132,243 + queC COO64_RS20145 0.41 -0.1 132,243 + queC COO64_RS20145 0.41 -0.9 132,243 + queC COO64_RS20145 0.41 +0.1 132,243 + queC COO64_RS20145 0.41 -0.2 132,243 + queC COO64_RS20145 0.41 +0.4 132,243 + queC COO64_RS20145 0.41 +0.8 132,243 + queC COO64_RS20145 0.41 -0.4 132,243 + queC COO64_RS20145 0.41 -0.5 132,244 - queC COO64_RS20145 0.41 -0.9 132,244 - queC COO64_RS20145 0.41 -0.7 132,244 - queC COO64_RS20145 0.41 -1.1 132,260 + queC COO64_RS20145 0.44 +1.1 132,260 + queC COO64_RS20145 0.44 +0.2 132,260 + queC COO64_RS20145 0.44 +1.5 132,261 - queC COO64_RS20145 0.44 +0.4 132,261 - queC COO64_RS20145 0.44 -0.4 132,315 - queC COO64_RS20145 0.52 -0.0 132,342 + queC COO64_RS20145 0.56 +0.9 132,343 - queC COO64_RS20145 0.56 +0.1 132,510 + queC COO64_RS20145 0.81 +1.0 132,511 - queC COO64_RS20145 0.81 -0.0 132,531 + queC COO64_RS20145 0.84 -0.5 132,613 + -0.5 132,749 + COO64_RS20150 0.64 -0.1 132,749 + COO64_RS20150 0.64 -0.3 132,749 + COO64_RS20150 0.64 -1.0 132,776 + +0.2 132,776 + +1.5 132,776 + +0.1 132,783 + -0.2 132,783 + -0.6 132,860 - +0.2 132,870 + -0.5 132,870 + -1.5 132,870 + -0.1 132,870 + +0.0 132,870 + -0.4 132,870 + -0.9 132,870 + +0.0 132,870 + +0.6 132,870 + +1.1 132,871 - -0.8 132,871 - +1.0 132,871 - +0.8 132,871 - +0.0 132,871 - -0.1 132,871 - +0.3 132,871 - +0.5 132,871 - +0.3 132,871 - -0.7 132,904 + +0.2 132,904 + -0.1 132,904 + +0.7 132,905 - -0.1 132,905 - +0.6 132,905 - -0.5 132,905 - +0.2 132,920 + -0.5 132,920 + -0.1 132,920 + -0.9 132,921 - -0.9 132,921 - +0.6 132,921 - +0.7
Or see this region's nucleotide sequence