Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01989

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01988 and MPMX26_01989 are separated by 763 nucleotidesMPMX26_01989 and MPMX26_01990 are separated by 345 nucleotides MPMX26_01988: MPMX26_01988 - GABA permease, at 2,044,623 to 2,046,050 _01988 MPMX26_01989: MPMX26_01989 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 2,046,814 to 2,048,220 _01989 MPMX26_01990: MPMX26_01990 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 2,048,566 to 2,049,501 _01990 Position (kb) 2046 2047 2048 2049Strain fitness (log2 ratio) -1 0 1at 2045.898 kb on - strand, within MPMX26_01988at 2046.344 kb on - strandat 2046.354 kb on - strandat 2046.466 kb on - strandat 2046.466 kb on - strandat 2046.503 kb on - strandat 2047.939 kb on + strand, within MPMX26_01989at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.940 kb on - strand, within MPMX26_01990at 2048.980 kb on - strand, within MPMX26_01990at 2049.048 kb on - strand, within MPMX26_01990at 2049.099 kb on - strand, within MPMX26_01990at 2049.100 kb on - strand, within MPMX26_01990at 2049.139 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,045,898 - MPMX26_01988 0.89 -0.8
2,046,344 - -0.2
2,046,354 - -1.2
2,046,466 - +0.4
2,046,466 - +0.4
2,046,503 - +1.2
2,047,939 + MPMX26_01989 0.80 +1.0
2,048,916 - MPMX26_01990 0.37 +0.6
2,048,916 - MPMX26_01990 0.37 -1.2
2,048,916 - MPMX26_01990 0.37 +0.6
2,048,916 - MPMX26_01990 0.37 -0.1
2,048,940 - MPMX26_01990 0.40 +0.7
2,048,980 - MPMX26_01990 0.44 +1.4
2,049,048 - MPMX26_01990 0.51 +1.0
2,049,099 - MPMX26_01990 0.57 +0.5
2,049,100 - MPMX26_01990 0.57 -0.0
2,049,139 - MPMX26_01990 0.61 -0.8
2,049,141 - MPMX26_01990 0.61 +0.7
2,049,141 - MPMX26_01990 0.61 +0.7
2,049,141 - MPMX26_01990 0.61 -0.1

Or see this region's nucleotide sequence