Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01332

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01330 and MPMX26_01331 are separated by 157 nucleotidesMPMX26_01331 and MPMX26_01332 are separated by 128 nucleotidesMPMX26_01332 and MPMX26_01333 are separated by 54 nucleotidesMPMX26_01333 and MPMX26_01334 are separated by 91 nucleotides MPMX26_01330: MPMX26_01330 - hypothetical protein, at 1,404,697 to 1,405,173 _01330 MPMX26_01331: MPMX26_01331 - DNA-binding protein HU-beta, at 1,405,331 to 1,405,603 _01331 MPMX26_01332: MPMX26_01332 - Peptidyl-prolyl cis-trans isomerase D, at 1,405,732 to 1,407,603 _01332 MPMX26_01333: MPMX26_01333 - hypothetical protein, at 1,407,658 to 1,408,149 _01333 MPMX26_01334: MPMX26_01334 - Acyl-CoA dehydrogenase, short-chain specific, at 1,408,241 to 1,409,440 _01334 Position (kb) 1405 1406 1407 1408Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1404.888 kb on + strand, within MPMX26_01330at 1405.018 kb on + strand, within MPMX26_01330at 1405.288 kb on + strandat 1405.288 kb on + strandat 1405.319 kb on + strandat 1405.319 kb on + strandat 1405.325 kb on + strandat 1405.750 kb on + strandat 1405.750 kb on + strandat 1405.758 kb on + strandat 1405.758 kb on + strandat 1405.758 kb on + strandat 1405.758 kb on + strandat 1405.891 kb on + strandat 1405.987 kb on + strand, within MPMX26_01332at 1406.152 kb on + strand, within MPMX26_01332at 1406.238 kb on + strand, within MPMX26_01332at 1406.238 kb on + strand, within MPMX26_01332at 1406.271 kb on + strand, within MPMX26_01332at 1406.271 kb on + strand, within MPMX26_01332at 1406.271 kb on + strand, within MPMX26_01332at 1406.271 kb on + strand, within MPMX26_01332at 1406.401 kb on + strand, within MPMX26_01332at 1406.442 kb on + strand, within MPMX26_01332at 1406.442 kb on + strand, within MPMX26_01332at 1406.599 kb on + strand, within MPMX26_01332at 1406.617 kb on + strand, within MPMX26_01332at 1406.665 kb on + strand, within MPMX26_01332at 1406.694 kb on + strand, within MPMX26_01332at 1406.694 kb on + strand, within MPMX26_01332at 1406.743 kb on + strand, within MPMX26_01332at 1406.776 kb on + strand, within MPMX26_01332at 1406.848 kb on + strand, within MPMX26_01332at 1406.851 kb on + strand, within MPMX26_01332at 1406.911 kb on + strand, within MPMX26_01332at 1406.980 kb on + strand, within MPMX26_01332at 1406.988 kb on + strand, within MPMX26_01332at 1407.133 kb on + strand, within MPMX26_01332at 1407.159 kb on + strand, within MPMX26_01332at 1407.159 kb on + strand, within MPMX26_01332at 1407.249 kb on + strand, within MPMX26_01332at 1407.249 kb on + strand, within MPMX26_01332at 1407.249 kb on + strand, within MPMX26_01332at 1407.286 kb on + strand, within MPMX26_01332at 1407.334 kb on + strand, within MPMX26_01332at 1407.346 kb on + strand, within MPMX26_01332at 1407.352 kb on + strand, within MPMX26_01332at 1407.406 kb on + strand, within MPMX26_01332at 1407.430 kb on + strandat 1407.447 kb on + strandat 1407.499 kb on + strandat 1407.793 kb on - strand, within MPMX26_01333

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,404,888 + MPMX26_01330 0.40 +1.3
1,405,018 + MPMX26_01330 0.67 -0.4
1,405,288 + -2.0
1,405,288 + -2.9
1,405,319 + -3.3
1,405,319 + -3.9
1,405,325 + -4.7
1,405,750 + -0.4
1,405,750 + -2.2
1,405,758 + -2.3
1,405,758 + -2.8
1,405,758 + -1.9
1,405,758 + -1.6
1,405,891 + -2.1
1,405,987 + MPMX26_01332 0.14 -1.8
1,406,152 + MPMX26_01332 0.22 -1.2
1,406,238 + MPMX26_01332 0.27 -3.0
1,406,238 + MPMX26_01332 0.27 -0.1
1,406,271 + MPMX26_01332 0.29 -1.7
1,406,271 + MPMX26_01332 0.29 -0.9
1,406,271 + MPMX26_01332 0.29 -0.4
1,406,271 + MPMX26_01332 0.29 -1.7
1,406,401 + MPMX26_01332 0.36 +0.6
1,406,442 + MPMX26_01332 0.38 -0.1
1,406,442 + MPMX26_01332 0.38 -2.1
1,406,599 + MPMX26_01332 0.46 -1.7
1,406,617 + MPMX26_01332 0.47 -0.9
1,406,665 + MPMX26_01332 0.50 -1.9
1,406,694 + MPMX26_01332 0.51 -1.6
1,406,694 + MPMX26_01332 0.51 -2.6
1,406,743 + MPMX26_01332 0.54 -0.4
1,406,776 + MPMX26_01332 0.56 -0.6
1,406,848 + MPMX26_01332 0.60 -1.4
1,406,851 + MPMX26_01332 0.60 -2.7
1,406,911 + MPMX26_01332 0.63 -1.0
1,406,980 + MPMX26_01332 0.67 -2.4
1,406,988 + MPMX26_01332 0.67 -1.7
1,407,133 + MPMX26_01332 0.75 -1.4
1,407,159 + MPMX26_01332 0.76 -1.2
1,407,159 + MPMX26_01332 0.76 -0.5
1,407,249 + MPMX26_01332 0.81 -1.1
1,407,249 + MPMX26_01332 0.81 -1.7
1,407,249 + MPMX26_01332 0.81 -1.4
1,407,286 + MPMX26_01332 0.83 -1.4
1,407,334 + MPMX26_01332 0.86 -1.2
1,407,346 + MPMX26_01332 0.86 -0.8
1,407,352 + MPMX26_01332 0.87 -0.9
1,407,406 + MPMX26_01332 0.89 -2.3
1,407,430 + -0.7
1,407,447 + -0.1
1,407,499 + -3.3
1,407,793 - MPMX26_01333 0.27 +1.7

Or see this region's nucleotide sequence