Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01218

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01216 and MPMX26_01217 are separated by 44 nucleotidesMPMX26_01217 and MPMX26_01218 are separated by 14 nucleotidesMPMX26_01218 and MPMX26_01219 overlap by 1 nucleotides MPMX26_01216: MPMX26_01216 - putative chromosome-partitioning protein ParB, at 1,291,614 to 1,292,501 _01216 MPMX26_01217: MPMX26_01217 - Biopolymer transport protein ExbB, at 1,292,546 to 1,293,178 _01217 MPMX26_01218: MPMX26_01218 - Tol-Pal system protein TolR, at 1,293,193 to 1,293,615 _01218 MPMX26_01219: MPMX26_01219 - Lipid A export ATP-binding/permease protein MsbA, at 1,293,615 to 1,295,342 _01219 Position (kb) 1293 1294Strain fitness (log2 ratio) -3 -2 -1 0 1at 1292.247 kb on + strand, within MPMX26_01216at 1292.269 kb on + strand, within MPMX26_01216at 1292.289 kb on + strand, within MPMX26_01216at 1292.304 kb on + strand, within MPMX26_01216at 1292.304 kb on + strand, within MPMX26_01216at 1292.314 kb on + strand, within MPMX26_01216at 1292.314 kb on + strand, within MPMX26_01216at 1292.314 kb on + strand, within MPMX26_01216at 1292.314 kb on + strand, within MPMX26_01216at 1292.353 kb on + strand, within MPMX26_01216at 1292.353 kb on + strand, within MPMX26_01216at 1292.353 kb on + strand, within MPMX26_01216at 1292.358 kb on + strand, within MPMX26_01216at 1292.465 kb on + strandat 1292.465 kb on + strandat 1292.496 kb on + strandat 1292.496 kb on + strandat 1292.539 kb on + strandat 1292.542 kb on - strandat 1292.574 kb on + strandat 1292.574 kb on + strandat 1292.574 kb on + strandat 1292.574 kb on + strandat 1292.598 kb on + strandat 1292.603 kb on + strandat 1292.632 kb on + strand, within MPMX26_01217at 1292.632 kb on + strand, within MPMX26_01217at 1292.661 kb on + strand, within MPMX26_01217at 1292.664 kb on + strand, within MPMX26_01217at 1292.715 kb on + strand, within MPMX26_01217at 1292.726 kb on + strand, within MPMX26_01217at 1292.727 kb on + strand, within MPMX26_01217at 1292.727 kb on + strand, within MPMX26_01217at 1292.727 kb on + strand, within MPMX26_01217at 1292.740 kb on + strand, within MPMX26_01217at 1292.764 kb on + strand, within MPMX26_01217at 1292.771 kb on + strand, within MPMX26_01217at 1292.771 kb on + strand, within MPMX26_01217at 1292.771 kb on + strand, within MPMX26_01217at 1292.800 kb on + strand, within MPMX26_01217at 1292.800 kb on + strand, within MPMX26_01217at 1292.800 kb on + strand, within MPMX26_01217at 1292.800 kb on + strand, within MPMX26_01217at 1292.800 kb on + strand, within MPMX26_01217at 1292.810 kb on + strand, within MPMX26_01217at 1292.878 kb on + strand, within MPMX26_01217at 1292.881 kb on + strand, within MPMX26_01217at 1292.886 kb on + strand, within MPMX26_01217at 1292.906 kb on + strand, within MPMX26_01217at 1292.908 kb on + strand, within MPMX26_01217at 1292.908 kb on + strand, within MPMX26_01217at 1292.908 kb on + strand, within MPMX26_01217at 1292.908 kb on + strand, within MPMX26_01217at 1292.911 kb on + strand, within MPMX26_01217at 1292.911 kb on + strand, within MPMX26_01217at 1292.913 kb on + strand, within MPMX26_01217at 1292.913 kb on + strand, within MPMX26_01217at 1292.913 kb on + strand, within MPMX26_01217at 1292.913 kb on + strand, within MPMX26_01217at 1292.913 kb on + strand, within MPMX26_01217at 1292.918 kb on + strand, within MPMX26_01217at 1292.918 kb on + strand, within MPMX26_01217at 1292.918 kb on + strand, within MPMX26_01217at 1292.923 kb on + strand, within MPMX26_01217at 1292.923 kb on + strand, within MPMX26_01217at 1292.957 kb on + strand, within MPMX26_01217at 1292.975 kb on + strand, within MPMX26_01217at 1293.087 kb on + strand, within MPMX26_01217at 1293.096 kb on + strand, within MPMX26_01217at 1293.128 kb on + strandat 1293.133 kb on + strandat 1293.311 kb on + strand, within MPMX26_01218at 1293.321 kb on + strand, within MPMX26_01218at 1293.931 kb on - strand, within MPMX26_01219

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,292,247 + MPMX26_01216 0.71 -1.0
1,292,269 + MPMX26_01216 0.74 +1.1
1,292,289 + MPMX26_01216 0.76 -0.5
1,292,304 + MPMX26_01216 0.78 -0.1
1,292,304 + MPMX26_01216 0.78 -0.9
1,292,314 + MPMX26_01216 0.79 -1.1
1,292,314 + MPMX26_01216 0.79 -0.0
1,292,314 + MPMX26_01216 0.79 +0.6
1,292,314 + MPMX26_01216 0.79 -2.2
1,292,353 + MPMX26_01216 0.83 -0.7
1,292,353 + MPMX26_01216 0.83 -0.7
1,292,353 + MPMX26_01216 0.83 -0.8
1,292,358 + MPMX26_01216 0.84 -0.9
1,292,465 + -1.4
1,292,465 + -0.3
1,292,496 + -0.0
1,292,496 + +0.3
1,292,539 + +0.4
1,292,542 - -0.8
1,292,574 + +1.3
1,292,574 + -0.1
1,292,574 + -0.9
1,292,574 + +1.0
1,292,598 + +0.6
1,292,603 + +0.6
1,292,632 + MPMX26_01217 0.14 -0.2
1,292,632 + MPMX26_01217 0.14 +0.1
1,292,661 + MPMX26_01217 0.18 +1.0
1,292,664 + MPMX26_01217 0.19 +0.6
1,292,715 + MPMX26_01217 0.27 +0.2
1,292,726 + MPMX26_01217 0.28 +1.1
1,292,727 + MPMX26_01217 0.29 +1.1
1,292,727 + MPMX26_01217 0.29 +0.4
1,292,727 + MPMX26_01217 0.29 +0.7
1,292,740 + MPMX26_01217 0.31 +0.1
1,292,764 + MPMX26_01217 0.34 +0.2
1,292,771 + MPMX26_01217 0.36 -0.1
1,292,771 + MPMX26_01217 0.36 +0.3
1,292,771 + MPMX26_01217 0.36 -0.5
1,292,800 + MPMX26_01217 0.40 -0.2
1,292,800 + MPMX26_01217 0.40 +0.3
1,292,800 + MPMX26_01217 0.40 -0.7
1,292,800 + MPMX26_01217 0.40 +0.1
1,292,800 + MPMX26_01217 0.40 -0.3
1,292,810 + MPMX26_01217 0.42 +0.3
1,292,878 + MPMX26_01217 0.52 +0.6
1,292,881 + MPMX26_01217 0.53 +0.3
1,292,886 + MPMX26_01217 0.54 -0.4
1,292,906 + MPMX26_01217 0.57 +0.5
1,292,908 + MPMX26_01217 0.57 -0.5
1,292,908 + MPMX26_01217 0.57 +0.4
1,292,908 + MPMX26_01217 0.57 -1.0
1,292,908 + MPMX26_01217 0.57 -0.0
1,292,911 + MPMX26_01217 0.58 +0.5
1,292,911 + MPMX26_01217 0.58 +0.0
1,292,913 + MPMX26_01217 0.58 +0.6
1,292,913 + MPMX26_01217 0.58 +0.8
1,292,913 + MPMX26_01217 0.58 -1.7
1,292,913 + MPMX26_01217 0.58 +0.3
1,292,913 + MPMX26_01217 0.58 -0.6
1,292,918 + MPMX26_01217 0.59 -0.9
1,292,918 + MPMX26_01217 0.59 +1.0
1,292,918 + MPMX26_01217 0.59 +0.1
1,292,923 + MPMX26_01217 0.60 +0.0
1,292,923 + MPMX26_01217 0.60 +0.8
1,292,957 + MPMX26_01217 0.65 +0.1
1,292,975 + MPMX26_01217 0.68 +0.2
1,293,087 + MPMX26_01217 0.85 -0.4
1,293,096 + MPMX26_01217 0.87 +0.3
1,293,128 + +0.3
1,293,133 + -0.6
1,293,311 + MPMX26_01218 0.28 -0.7
1,293,321 + MPMX26_01218 0.30 -0.7
1,293,931 - MPMX26_01219 0.18 -3.1

Or see this region's nucleotide sequence