Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF968 and GFF969 are separated by 66 nucleotides GFF969 and GFF970 are separated by 51 nucleotides GFF970 and GFF971 are separated by 11 nucleotides GFF971 and GFF972 are separated by 30 nucleotides
GFF968 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 705,037 to 706,203
GFF968
GFF969 - Enoyl-CoA hydratase (EC 4.2.1.17), at 706,270 to 707,073
GFF969
GFF970 - MaoC-like dehydratase, at 707,125 to 707,982
GFF970
GFF971 - Short-chain dehydrogenase/reductase SDR, at 707,994 to 708,914
GFF971
GFF972 - Thiolase precursor, at 708,945 to 710,102
GFF972
Position (kb) 707
708 Strain fitness (log2 ratio) -1
0
1 at 706.149 kb on + strand at 706.149 kb on + strand at 706.150 kb on - strand at 706.160 kb on + strand at 706.166 kb on + strand at 706.166 kb on + strand at 706.167 kb on - strand at 706.167 kb on - strand at 706.574 kb on + strand, within GFF969 at 706.575 kb on - strand, within GFF969 at 706.575 kb on - strand, within GFF969 at 706.575 kb on - strand, within GFF969 at 706.577 kb on + strand, within GFF969 at 706.577 kb on + strand, within GFF969 at 706.577 kb on + strand, within GFF969 at 706.578 kb on - strand, within GFF969 at 706.578 kb on - strand, within GFF969 at 706.578 kb on - strand, within GFF969 at 706.578 kb on - strand, within GFF969 at 706.666 kb on - strand, within GFF969 at 706.784 kb on + strand, within GFF969 at 706.784 kb on + strand, within GFF969 at 706.785 kb on - strand, within GFF969 at 707.066 kb on + strand at 707.067 kb on - strand at 707.336 kb on + strand, within GFF970 at 707.336 kb on + strand, within GFF970 at 707.337 kb on - strand, within GFF970 at 707.337 kb on - strand, within GFF970 at 707.415 kb on - strand, within GFF970 at 707.433 kb on - strand, within GFF970 at 707.621 kb on + strand, within GFF970 at 707.792 kb on + strand, within GFF970 at 707.840 kb on + strand, within GFF970 at 707.841 kb on - strand, within GFF970 at 707.841 kb on - strand, within GFF970 at 707.900 kb on + strand at 707.901 kb on - strand at 707.901 kb on - strand at 707.924 kb on + strand at 707.970 kb on - strand at 708.240 kb on - strand, within GFF971 at 708.352 kb on + strand, within GFF971 at 708.353 kb on - strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 706,149 + +0.6 706,149 + +0.1 706,150 - -0.0 706,160 + -0.4 706,166 + -0.1 706,166 + +1.3 706,167 - -1.1 706,167 - +0.3 706,574 + GFF969 0.38 -0.5 706,575 - GFF969 0.38 +0.1 706,575 - GFF969 0.38 +0.1 706,575 - GFF969 0.38 +0.3 706,577 + GFF969 0.38 -0.8 706,577 + GFF969 0.38 -0.6 706,577 + GFF969 0.38 +0.1 706,578 - GFF969 0.38 +0.1 706,578 - GFF969 0.38 -0.1 706,578 - GFF969 0.38 -0.0 706,578 - GFF969 0.38 -0.5 706,666 - GFF969 0.49 -0.1 706,784 + GFF969 0.64 -0.4 706,784 + GFF969 0.64 +1.0 706,785 - GFF969 0.64 -0.4 707,066 + -0.1 707,067 - -0.8 707,336 + GFF970 0.25 -0.8 707,336 + GFF970 0.25 -0.7 707,337 - GFF970 0.25 +0.4 707,337 - GFF970 0.25 +0.1 707,415 - GFF970 0.34 +0.0 707,433 - GFF970 0.36 -0.4 707,621 + GFF970 0.58 -0.6 707,792 + GFF970 0.78 -0.4 707,840 + GFF970 0.83 -0.3 707,841 - GFF970 0.83 -0.2 707,841 - GFF970 0.83 -0.3 707,900 + +0.2 707,901 - +0.1 707,901 - -0.1 707,924 + -0.6 707,970 - -0.1 708,240 - GFF971 0.27 +0.5 708,352 + GFF971 0.39 -0.1 708,353 - GFF971 0.39 -0.4 708,415 + GFF971 0.46 -0.3 708,415 + GFF971 0.46 -0.5 708,470 - GFF971 0.52 +0.3 708,470 - GFF971 0.52 -0.4 708,470 - GFF971 0.52 +0.7 708,470 - GFF971 0.52 +0.8
Or see this region's nucleotide sequence