Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF793 and GFF794 are separated by 33 nucleotides GFF794 and GFF795 are separated by 19 nucleotides
GFF793 - Tricarboxylate transport protein TctC, at 488,356 to 489,327
GFF793
GFF794 - Glucarate dehydratase (EC 4.2.1.40), at 489,361 to 490,650
GFF794
GFF795 - TRAP-type C4-dicarboxylate transport system, large permease component, at 490,670 to 491,962
GFF795
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 488.777 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 489.899 kb on + strand, within GFF794 at 489.900 kb on - strand, within GFF794 at 489.902 kb on + strand, within GFF794 at 489.903 kb on - strand, within GFF794 at 490.184 kb on + strand, within GFF794 at 490.193 kb on + strand, within GFF794 at 490.496 kb on + strand, within GFF794 at 490.671 kb on + strand at 490.671 kb on + strand at 490.672 kb on - strand at 491.068 kb on - strand, within GFF795 at 491.184 kb on + strand, within GFF795 at 491.185 kb on - strand, within GFF795 at 491.383 kb on - strand, within GFF795 at 491.386 kb on - strand, within GFF795 at 491.562 kb on + strand, within GFF795 at 491.563 kb on - strand, within GFF795
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 488,777 + GFF793 0.43 -0.1 488,786 + GFF793 0.44 -1.5 488,786 + GFF793 0.44 +0.3 488,786 + GFF793 0.44 +0.9 488,786 + GFF793 0.44 +1.1 488,787 - GFF793 0.44 +0.2 488,787 - GFF793 0.44 +1.5 488,787 - GFF793 0.44 +0.5 488,787 - GFF793 0.44 -0.5 488,787 - GFF793 0.44 +0.5 488,787 - GFF793 0.44 -0.6 489,899 + GFF794 0.42 -0.1 489,900 - GFF794 0.42 -2.3 489,902 + GFF794 0.42 -0.0 489,903 - GFF794 0.42 -0.2 490,184 + GFF794 0.64 -0.2 490,193 + GFF794 0.64 -1.3 490,496 + GFF794 0.88 +0.3 490,671 + -1.5 490,671 + -0.0 490,672 - -1.0 491,068 - GFF795 0.31 +0.2 491,184 + GFF795 0.40 +0.8 491,185 - GFF795 0.40 -0.2 491,383 - GFF795 0.55 -1.3 491,386 - GFF795 0.55 -0.2 491,562 + GFF795 0.69 +0.4 491,563 - GFF795 0.69 +1.0
Or see this region's nucleotide sequence