Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5809 and GFF5810 are separated by 42 nucleotides GFF5810 and GFF5811 are separated by 19 nucleotides GFF5811 and GFF5812 overlap by 11 nucleotides
GFF5809 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 1,621 to 2,268
GFF5809
GFF5810 - Copper-containing nitrite reductase (EC 1.7.2.1), at 2,311 to 2,919
GFF5810
GFF5811 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 2,939 to 3,586
GFF5811
GFF5812 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 3,576 to 5,228
GFF5812
Position (kb) 2
3
4 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1.999 kb on - strand, within GFF5809 at 2.036 kb on + strand, within GFF5809 at 2.447 kb on + strand, within GFF5810 at 2.448 kb on - strand, within GFF5810 at 2.448 kb on - strand, within GFF5810 at 2.510 kb on + strand, within GFF5810 at 2.511 kb on - strand, within GFF5810 at 2.672 kb on + strand, within GFF5810 at 2.673 kb on - strand, within GFF5810 at 2.787 kb on + strand, within GFF5810 at 3.027 kb on + strand, within GFF5811 at 3.028 kb on - strand, within GFF5811 at 3.028 kb on - strand, within GFF5811 at 3.051 kb on + strand, within GFF5811 at 3.318 kb on + strand, within GFF5811 at 3.324 kb on + strand, within GFF5811 at 3.429 kb on + strand, within GFF5811 at 3.430 kb on - strand, within GFF5811 at 3.507 kb on + strand, within GFF5811 at 3.508 kb on - strand, within GFF5811 at 3.830 kb on - strand, within GFF5812 at 3.830 kb on - strand, within GFF5812 at 4.061 kb on - strand, within GFF5812 at 4.102 kb on + strand, within GFF5812 at 4.300 kb on + strand, within GFF5812 at 4.300 kb on + strand, within GFF5812 at 4.343 kb on - strand, within GFF5812 at 4.459 kb on + strand, within GFF5812 at 4.460 kb on - strand, within GFF5812 at 4.510 kb on + strand, within GFF5812 at 4.510 kb on + strand, within GFF5812 at 4.511 kb on - strand, within GFF5812 at 4.511 kb on - strand, within GFF5812 at 4.511 kb on - strand, within GFF5812 at 4.511 kb on - strand, within GFF5812 at 4.511 kb on - strand, within GFF5812 at 4.521 kb on + strand, within GFF5812 at 4.522 kb on - strand, within GFF5812 at 4.522 kb on - strand, within GFF5812 at 4.583 kb on + strand, within GFF5812 at 4.583 kb on + strand, within GFF5812
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 1,999 - GFF5809 0.58 -1.1 2,036 + GFF5809 0.64 +0.1 2,447 + GFF5810 0.22 -0.1 2,448 - GFF5810 0.22 +0.1 2,448 - GFF5810 0.22 +0.7 2,510 + GFF5810 0.33 -0.2 2,511 - GFF5810 0.33 +0.2 2,672 + GFF5810 0.59 +0.0 2,673 - GFF5810 0.59 +0.2 2,787 + GFF5810 0.78 +0.2 3,027 + GFF5811 0.14 -0.5 3,028 - GFF5811 0.14 +0.5 3,028 - GFF5811 0.14 -0.2 3,051 + GFF5811 0.17 +2.2 3,318 + GFF5811 0.58 -0.5 3,324 + GFF5811 0.59 +1.3 3,429 + GFF5811 0.76 -0.4 3,430 - GFF5811 0.76 +0.3 3,507 + GFF5811 0.88 -0.0 3,508 - GFF5811 0.88 +1.4 3,830 - GFF5812 0.15 -2.6 3,830 - GFF5812 0.15 +0.5 4,061 - GFF5812 0.29 -0.2 4,102 + GFF5812 0.32 +1.0 4,300 + GFF5812 0.44 -0.6 4,300 + GFF5812 0.44 +0.3 4,343 - GFF5812 0.46 +0.1 4,459 + GFF5812 0.53 -0.3 4,460 - GFF5812 0.53 -0.5 4,510 + GFF5812 0.57 +0.5 4,510 + GFF5812 0.57 -0.4 4,511 - GFF5812 0.57 -0.2 4,511 - GFF5812 0.57 -0.4 4,511 - GFF5812 0.57 +0.4 4,511 - GFF5812 0.57 +0.3 4,511 - GFF5812 0.57 -0.1 4,521 + GFF5812 0.57 -0.6 4,522 - GFF5812 0.57 +0.2 4,522 - GFF5812 0.57 +0.8 4,583 + GFF5812 0.61 +0.2 4,583 + GFF5812 0.61 +0.1
Or see this region's nucleotide sequence