Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF510 and GFF511 are separated by 142 nucleotides GFF511 and GFF512 are separated by 20 nucleotides GFF512 and GFF513 overlap by 4 nucleotides
GFF510 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 178,147 to 179,022
GFF510
GFF511 - expressed protein, at 179,165 to 180,586
GFF511
GFF512 - Small uncharacterized protein Bpro_4170, at 180,607 to 180,957
GFF512
GFF513 - Enoyl-CoA hydratase (EC 4.2.1.17), at 180,954 to 181,745
GFF513
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.221 kb on - strand at 178.221 kb on - strand at 178.221 kb on - strand at 178.221 kb on - strand at 178.253 kb on + strand, within GFF510 at 178.253 kb on + strand, within GFF510 at 178.253 kb on + strand, within GFF510 at 178.254 kb on - strand, within GFF510 at 178.481 kb on + strand, within GFF510 at 178.482 kb on - strand, within GFF510 at 178.484 kb on + strand, within GFF510 at 178.539 kb on - strand, within GFF510 at 178.678 kb on + strand, within GFF510 at 178.678 kb on + strand, within GFF510 at 178.679 kb on - strand, within GFF510 at 178.715 kb on + strand, within GFF510 at 178.940 kb on + strand at 178.940 kb on + strand at 178.941 kb on - strand at 178.973 kb on + strand at 178.974 kb on - strand at 179.036 kb on + strand at 179.036 kb on + strand at 179.037 kb on - strand at 179.102 kb on + strand at 179.103 kb on - strand at 179.105 kb on - strand at 179.219 kb on + strand at 179.220 kb on - strand at 179.946 kb on + strand, within GFF511 at 179.947 kb on - strand, within GFF511 at 179.947 kb on - strand, within GFF511 at 180.032 kb on + strand, within GFF511 at 180.287 kb on + strand, within GFF511 at 180.287 kb on + strand, within GFF511 at 180.288 kb on - strand, within GFF511 at 180.296 kb on + strand, within GFF511 at 180.507 kb on + strand at 180.511 kb on + strand at 180.511 kb on + strand at 180.511 kb on + strand at 180.512 kb on - strand at 181.153 kb on - strand, within GFF513 at 181.368 kb on + strand, within GFF513 at 181.369 kb on - strand, within GFF513
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 178,221 - -0.4 178,221 - +0.8 178,221 - -0.2 178,221 - -0.4 178,253 + GFF510 0.12 -0.1 178,253 + GFF510 0.12 +0.4 178,253 + GFF510 0.12 -0.0 178,254 - GFF510 0.12 +0.3 178,481 + GFF510 0.38 +0.1 178,482 - GFF510 0.38 +0.5 178,484 + GFF510 0.38 -2.0 178,539 - GFF510 0.45 +2.3 178,678 + GFF510 0.61 -0.4 178,678 + GFF510 0.61 -0.4 178,679 - GFF510 0.61 +2.2 178,715 + GFF510 0.65 -0.1 178,940 + -0.0 178,940 + +0.4 178,941 - +0.1 178,973 + +1.3 178,974 - +0.0 179,036 + +0.7 179,036 + +0.7 179,037 - +0.3 179,102 + +0.2 179,103 - -0.4 179,105 - -0.2 179,219 + +1.7 179,220 - +0.5 179,946 + GFF511 0.55 +0.5 179,947 - GFF511 0.55 +0.5 179,947 - GFF511 0.55 -0.1 180,032 + GFF511 0.61 -0.2 180,287 + GFF511 0.79 -0.2 180,287 + GFF511 0.79 -1.0 180,288 - GFF511 0.79 -0.3 180,296 + GFF511 0.80 -0.5 180,507 + +1.0 180,511 + -0.8 180,511 + -0.8 180,511 + +0.3 180,512 - -0.1 181,153 - GFF513 0.25 +1.7 181,368 + GFF513 0.52 -0.1 181,369 - GFF513 0.52 -0.8
Or see this region's nucleotide sequence