Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4647

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,596,311	+				-0.1
1,596,312	-				-0.9
1,596,335	+				-0.1
1,596,335	+				+0.0
1,596,438	-				-0.1
1,596,438	-				-0.8
1,596,449	-				+1.3
1,596,449	-				+0.6
1,596,551	-				-1.0
1,596,551	-				+0.1
1,596,554	+				-1.9
1,596,554	+				-0.0
1,596,554	+				+0.9
1,596,577	+				+0.4
1,596,578	-				-0.9
1,596,587	+				+0.1
1,596,587	+				+0.3
1,596,588	-				-0.3
1,596,588	-				-0.2
1,596,645	+				+1.5
1,596,646	-				-0.1
1,596,646	-				-0.4
1,596,646	-				-0.6
1,596,646	-				-0.0
1,596,924	+		GFF4646	0.22	+0.3
1,596,924	+		GFF4646	0.22	+0.5
1,596,925	-		GFF4646	0.23	-0.9
1,596,925	-		GFF4646	0.23	-0.2
1,596,927	+		GFF4646	0.24	-0.6
1,596,928	-		GFF4646	0.25	+0.6
1,596,928	-		GFF4646	0.25	-0.2
1,597,169	-		GFF4647	0.73	-0.1
1,597,169	-		GFF4647	0.73	-0.2
1,597,169	-		GFF4647	0.73	-0.2
1,597,205	+				-0.8
1,597,456	+				-0.2
1,597,457	-				+0.4
1,597,457	-				+0.5
1,597,467	+				+0.3
1,597,467	+				+0.1
1,597,468	-				-1.5
1,597,468	-				+0.5
1,597,468	-				-0.3
1,597,479	+				+0.4
1,597,479	+				-0.3
1,597,479	+				+0.3
1,597,479	+				+0.7
1,597,480	-				+2.0
1,597,480	-				+0.3
1,597,480	-				+0.1
1,597,480	-				-0.3
1,597,480	-				-0.3
1,597,580	+				+0.5
1,597,580	+				-0.1
1,597,580	+				+0.2
1,597,580	+				+0.5
1,597,580	+				-0.2
1,597,580	+				-0.7
1,597,580	+				+0.1
1,597,580	+				+1.0
1,597,581	-				+0.8
1,597,581	-				-0.3
1,597,581	-				+1.0
1,597,581	-				+0.3
1,597,581	-				-0.1
1,597,611	+				-0.5
1,597,612	-				+0.3
1,597,641	-				+0.0
1,597,641	-				+0.3
1,597,770	-				+1.0
1,597,770	-				+0.5
1,597,949	+		GFF4648	0.17	+0.3
1,597,950	-		GFF4648	0.17	-0.9
1,597,950	-		GFF4648	0.17	-0.8
1,597,977	-		GFF4648	0.20	-0.6