Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4389

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,316,427	-		GFF4388	0.56	-1.7
1,316,427	-		GFF4388	0.56	-0.9
1,316,433	+		GFF4388	0.56	+0.3
1,316,479	+		GFF4388	0.62	-0.1
1,316,529	+		GFF4388	0.69	-0.1
1,316,530	-		GFF4388	0.69	-0.3
1,316,530	-		GFF4388	0.69	+0.3
1,316,530	-		GFF4388	0.69	-0.3
1,316,533	+		GFF4388	0.70	+0.1
1,316,533	+		GFF4388	0.70	-0.6
1,316,534	-		GFF4388	0.70	+0.4
1,316,534	-		GFF4388	0.70	-0.2
1,316,747	+				-1.1
1,316,747	+				-0.7
1,316,849	-				-0.2
1,316,873	+				+0.4
1,316,907	+				-0.8
1,316,908	-				+1.1
1,316,954	-				-0.6
1,316,954	-				-1.1
1,316,954	-				+1.5
1,317,170	-				-0.4
1,317,170	-				-0.1
1,317,574	+		GFF4389	0.21	-0.4
1,317,574	+		GFF4389	0.21	-0.3
1,317,574	+		GFF4389	0.21	-1.2
1,317,574	+		GFF4389	0.21	-0.2
1,317,574	+		GFF4389	0.21	+0.3
1,317,575	-		GFF4389	0.21	-1.0
1,317,575	-		GFF4389	0.21	+0.4
1,317,575	-		GFF4389	0.21	+0.0
1,317,575	-		GFF4389	0.21	+1.7
1,317,575	-		GFF4389	0.21	-1.6
1,317,575	-		GFF4389	0.21	-0.1
1,317,737	+		GFF4389	0.39	-1.8
1,317,779	+		GFF4389	0.44	-0.1
1,317,779	+		GFF4389	0.44	-0.2
1,317,779	+		GFF4389	0.44	-0.4
1,317,779	+		GFF4389	0.44	-0.7
1,317,779	+		GFF4389	0.44	+0.4
1,317,895	+		GFF4389	0.58	-1.2
1,318,009	+		GFF4389	0.71	-0.2
1,318,308	+				-0.3
1,318,308	+				-0.2
1,318,309	-				+0.5
1,318,327	+				+0.1
1,318,343	+				-0.0
1,318,344	+				+0.3
1,318,568	-		GFF4390	0.15	+0.0
1,318,928	+		GFF4390	0.37	-0.5
1,318,951	+		GFF4390	0.38	-0.4
1,318,952	-		GFF4390	0.38	+0.3
1,319,059	+		GFF4390	0.45	+0.9
1,319,060	-		GFF4390	0.45	+0.2
1,319,119	+		GFF4390	0.49	-0.8
1,319,233	+		GFF4390	0.56	+0.4
1,319,234	-		GFF4390	0.56	+0.2