Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4170

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,085,041	-		GFF4169	0.37	+0.5
1,085,041	-		GFF4169	0.37	+0.1
1,085,377	+		GFF4169	0.59	+0.3
1,085,377	+		GFF4169	0.59	-0.4
1,085,377	+		GFF4169	0.59	+0.2
1,085,377	+		GFF4169	0.59	+0.4
1,085,377	+		GFF4169	0.59	+0.0
1,085,378	-		GFF4169	0.59	+0.6
1,085,378	-		GFF4169	0.59	+0.4
1,085,378	-		GFF4169	0.59	-0.1
1,085,378	-		GFF4169	0.59	+0.5
1,085,378	-		GFF4169	0.59	-0.2
1,085,378	-		GFF4169	0.59	-0.2
1,085,442	+		GFF4169	0.63	-0.1
1,085,443	-		GFF4169	0.64	+0.4
1,085,544	+		GFF4169	0.70	-0.1
1,085,662	-		GFF4169	0.78	+0.9
1,085,721	+		GFF4169	0.82	-0.9
1,085,784	+		GFF4169	0.86	+0.3
1,085,784	+		GFF4169	0.86	-0.1
1,085,784	+		GFF4169	0.86	-0.4
1,085,785	-		GFF4169	0.86	-0.2
1,085,785	-		GFF4169	0.86	-0.8
1,085,880	+				-0.6
1,085,880	+				+0.3
1,085,880	+				+1.4
1,085,881	-				-0.7
1,085,881	-				-2.5
1,086,209	+		GFF4170	0.13	-0.6
1,086,210	-		GFF4170	0.13	-0.7
1,086,210	-		GFF4170	0.13	+0.1
1,086,210	-		GFF4170	0.13	+0.1
1,086,210	-		GFF4170	0.13	+0.5
1,086,210	-		GFF4170	0.13	-2.1
1,086,212	-		GFF4170	0.13	+1.0
1,086,212	-		GFF4170	0.13	-0.6
1,086,212	-		GFF4170	0.13	+0.6
1,086,212	-		GFF4170	0.13	-0.2
1,086,441	+		GFF4170	0.27	-0.6
1,086,441	+		GFF4170	0.27	-0.1
1,086,441	+		GFF4170	0.27	+1.7
1,086,442	-		GFF4170	0.27	+1.0
1,086,442	-		GFF4170	0.27	-0.0
1,086,442	-		GFF4170	0.27	-0.3
1,086,442	-		GFF4170	0.27	-1.4
1,086,464	+		GFF4170	0.29	+0.3
1,086,464	+		GFF4170	0.29	+0.3
1,086,464	+		GFF4170	0.29	-1.0
1,086,464	+		GFF4170	0.29	+0.2
1,086,464	+		GFF4170	0.29	+0.1
1,086,465	-		GFF4170	0.29	-0.0
1,086,465	-		GFF4170	0.29	-0.2
1,086,465	-		GFF4170	0.29	-0.9
1,086,465	-		GFF4170	0.29	+0.4
1,086,465	-		GFF4170	0.29	+0.1
1,086,551	+		GFF4170	0.34	-1.3
1,086,551	+		GFF4170	0.34	+0.4
1,086,551	+		GFF4170	0.34	+0.4
1,086,551	+		GFF4170	0.34	-0.2
1,086,551	+		GFF4170	0.34	-0.2
1,086,692	-		GFF4170	0.44	+0.9
1,086,785	+		GFF4170	0.50	+1.0
1,086,785	+		GFF4170	0.50	-0.6
1,086,786	-		GFF4170	0.50	+0.8
1,086,803	+		GFF4170	0.51	-0.3
1,086,803	+		GFF4170	0.51	-0.9
1,086,804	-		GFF4170	0.51	-0.1
1,086,804	-		GFF4170	0.51	+0.9
1,086,804	-		GFF4170	0.51	-0.2
1,086,804	-		GFF4170	0.51	-0.6
1,086,804	-		GFF4170	0.51	+0.1
1,086,804	-		GFF4170	0.51	-1.0
1,086,924	-		GFF4170	0.58	-0.6
1,086,924	-		GFF4170	0.58	-1.5
1,086,924	-		GFF4170	0.58	+0.9
1,086,924	-		GFF4170	0.58	-0.6
1,086,924	-		GFF4170	0.58	-0.1
1,086,924	-		GFF4170	0.58	-0.3
1,086,924	-		GFF4170	0.58	+0.0
1,087,141	+		GFF4170	0.72	-0.3
1,087,204	+		GFF4170	0.76	+0.3
1,087,205	-		GFF4170	0.76	-0.2
1,087,205	-		GFF4170	0.76	-0.5
1,087,215	+		GFF4170	0.77	+0.2
1,087,215	+		GFF4170	0.77	+1.5
1,087,216	-		GFF4170	0.77	+0.4
1,087,235	+		GFF4170	0.78	-0.3
1,087,235	+		GFF4170	0.78	+1.1
1,087,235	+		GFF4170	0.78	+0.8
1,087,235	+		GFF4170	0.78	-0.4
1,087,235	+		GFF4170	0.78	-0.3
1,087,235	+		GFF4170	0.78	-0.7
1,087,236	-		GFF4170	0.78	-0.1
1,087,236	-		GFF4170	0.78	-1.0
1,087,236	-		GFF4170	0.78	+0.0
1,087,236	-		GFF4170	0.78	+0.0
1,087,236	-		GFF4170	0.78	-0.2
1,087,236	-		GFF4170	0.78	-0.2
1,087,236	-		GFF4170	0.78	+0.0
1,087,236	-		GFF4170	0.78	-0.0
1,087,236	-		GFF4170	0.78	+0.2
1,087,236	-		GFF4170	0.78	-1.1
1,087,236	-		GFF4170	0.78	+0.4
1,087,458	+				+0.2
1,087,494	+				+0.3
1,087,494	+				+0.9
1,087,495	-				-1.5
1,087,495	-				+1.8
1,087,495	-				-1.1
1,087,495	-				+0.2
1,087,568	+				+0.6
1,087,569	-				+0.4
1,087,569	-				-0.0
1,087,569	-				+0.3
1,087,604	+				+0.1
1,087,604	+				+0.6
1,087,605	-				-1.2
1,087,650	+				-0.8
1,087,650	+				-0.0
1,087,651	-				-0.4
1,087,651	-				-0.5
1,087,688	+		GFF4171	0.11	-0.0
1,087,701	+		GFF4171	0.12	+0.7
1,087,701	+		GFF4171	0.12	+0.5
1,087,701	+		GFF4171	0.12	-1.3
1,087,701	+		GFF4171	0.12	-0.4
1,087,702	-		GFF4171	0.12	+0.5
1,087,702	-		GFF4171	0.12	+0.3
1,087,702	-		GFF4171	0.12	-0.3
1,087,702	-		GFF4171	0.12	-0.2
1,087,702	-		GFF4171	0.12	+1.5
1,087,759	+		GFF4171	0.17	-0.4
1,087,759	+		GFF4171	0.17	-0.1
1,087,759	+		GFF4171	0.17	+0.2
1,087,760	-		GFF4171	0.18	+0.4
1,087,760	-		GFF4171	0.18	-0.2
1,087,760	-		GFF4171	0.18	+0.5
1,087,921	+		GFF4171	0.33	+0.1
1,087,921	+		GFF4171	0.33	+0.1
1,087,922	-		GFF4171	0.33	-0.1
1,087,993	-		GFF4171	0.40	-0.8
1,088,208	+		GFF4171	0.61	-0.0
1,088,208	+		GFF4171	0.61	-0.3
1,088,208	+		GFF4171	0.61	-0.1
1,088,208	+		GFF4171	0.61	-0.0
1,088,209	-		GFF4171	0.61	+1.1
1,088,209	-		GFF4171	0.61	-0.8
1,088,209	-		GFF4171	0.61	+1.0
1,088,209	-		GFF4171	0.61	+0.7
1,088,209	-		GFF4171	0.61	-0.2
1,088,209	-		GFF4171	0.61	+0.3
1,088,209	-		GFF4171	0.61	+0.4
1,088,209	-		GFF4171	0.61	+1.0
1,088,322	+		GFF4171	0.72	-0.5
1,088,323	-		GFF4171	0.72	+0.2
1,088,460	+		GFF4171	0.85	+0.1
1,088,461	-		GFF4171	0.85	-0.2
1,088,461	-		GFF4171	0.85	-0.1
1,088,528	+				-0.2
1,088,528	+				+1.2
1,088,528	+				-0.3