Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3907 and GFF3908 overlap by 4 nucleotides GFF3908 and GFF3909 are separated by 10 nucleotides GFF3909 and GFF3910 are separated by 79 nucleotides
GFF3907 - Thiamin biosynthesis lipoprotein ApbE, at 818,880 to 819,944
GFF3907
GFF3908 - probable oxidoreductase, at 819,941 to 821,320
GFF3908
GFF3909 - Iron-uptake factor PiuC, at 821,331 to 822,011
GFF3909
GFF3910 - Ferrichrome-iron receptor, at 822,091 to 824,298
GFF3910
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -1
0
1 at 819.456 kb on + strand, within GFF3907 at 819.670 kb on - strand, within GFF3907 at 819.681 kb on + strand, within GFF3907 at 819.862 kb on + strand at 819.862 kb on + strand at 819.962 kb on + strand at 819.962 kb on + strand at 819.962 kb on + strand at 819.986 kb on + strand at 819.986 kb on + strand at 819.987 kb on - strand at 819.987 kb on - strand at 820.103 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.373 kb on + strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.374 kb on - strand, within GFF3908 at 820.724 kb on + strand, within GFF3908 at 820.724 kb on + strand, within GFF3908 at 821.130 kb on - strand, within GFF3908 at 821.199 kb on - strand at 821.316 kb on - strand at 821.365 kb on + strand at 821.632 kb on + strand, within GFF3909 at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.177 kb on - strand at 822.177 kb on - strand at 822.197 kb on + strand at 822.237 kb on - strand at 822.237 kb on - strand at 822.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 819,456 + GFF3907 0.54 -1.2 819,670 - GFF3907 0.74 +0.3 819,681 + GFF3907 0.75 +0.1 819,862 + -0.7 819,862 + -0.4 819,962 + +0.1 819,962 + -0.1 819,962 + +0.2 819,986 + +0.0 819,986 + -0.1 819,987 - -1.7 819,987 - +0.4 820,103 + GFF3908 0.12 -0.2 820,373 + GFF3908 0.31 +0.2 820,373 + GFF3908 0.31 +0.3 820,373 + GFF3908 0.31 -1.6 820,373 + GFF3908 0.31 -0.4 820,373 + GFF3908 0.31 +0.7 820,373 + GFF3908 0.31 +0.5 820,374 - GFF3908 0.31 -0.4 820,374 - GFF3908 0.31 +1.0 820,374 - GFF3908 0.31 +0.2 820,724 + GFF3908 0.57 -0.7 820,724 + GFF3908 0.57 -0.1 821,130 - GFF3908 0.86 -0.6 821,199 - +0.0 821,316 - -0.1 821,365 + -0.6 821,632 + GFF3909 0.44 -0.8 822,176 + -0.8 822,176 + +0.3 822,176 + -0.2 822,176 + +0.3 822,176 + -0.1 822,177 - +0.3 822,177 - -0.6 822,197 + +0.3 822,237 - +0.6 822,237 - +1.1 822,263 + +0.1
Or see this region's nucleotide sequence