Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3854 and GFF5789 are separated by 36 nucleotides GFF5789 and GFF3855 are separated by 183 nucleotides GFF3855 and GFF3856 are separated by 143 nucleotides GFF3856 and GFF3857 are separated by 37 nucleotides
GFF3854 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 764,980 to 766,899
GFF3854
GFF5789 - tRNA-His-GTG, at 766,936 to 767,008
GFF5789
GFF3855 - hypothetical protein, at 767,192 to 767,494
GFF3855
GFF3856 - Tricarboxylate transport protein TctC, at 767,638 to 768,621
GFF3856
GFF3857 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 768,659 to 770,647
GFF3857
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1 at 766.705 kb on + strand, within GFF3854 at 766.706 kb on - strand, within GFF3854 at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.819 kb on + strand at 766.820 kb on - strand at 766.820 kb on - strand at 766.820 kb on - strand at 766.919 kb on - strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.117 kb on - strand at 767.117 kb on - strand at 767.492 kb on + strand at 767.492 kb on + strand at 767.492 kb on + strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.626 kb on - strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.714 kb on + strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.891 kb on + strand, within GFF3856 at 767.892 kb on - strand, within GFF3856 at 767.892 kb on - strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.107 kb on + strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.108 kb on - strand, within GFF3856 at 768.152 kb on + strand, within GFF3856 at 768.152 kb on + strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.153 kb on - strand, within GFF3856 at 768.182 kb on + strand, within GFF3856 at 768.183 kb on - strand, within GFF3856 at 768.287 kb on + strand, within GFF3856 at 768.287 kb on + strand, within GFF3856 at 768.288 kb on - strand, within GFF3856 at 768.350 kb on + strand, within GFF3856 at 768.501 kb on - strand, within GFF3856 at 768.738 kb on + strand at 768.738 kb on + strand at 768.739 kb on - strand at 769.279 kb on - strand, within GFF3857 at 769.536 kb on + strand, within GFF3857 at 769.537 kb on - strand, within GFF3857 at 769.617 kb on + strand, within GFF3857
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 766,705 + GFF3854 0.90 +0.9 766,706 - GFF3854 0.90 +0.1 766,783 + +1.1 766,783 + -0.3 766,783 + +0.4 766,783 + -1.2 766,783 + +0.1 766,783 + +0.1 766,819 + +0.5 766,820 - -0.0 766,820 - +0.2 766,820 - -0.5 766,919 - -0.3 767,067 + -1.5 767,067 + +0.9 767,067 + -0.3 767,067 + +0.2 767,116 + +0.6 767,116 + -0.5 767,116 + +0.5 767,116 + +0.1 767,116 + -0.4 767,116 + +1.0 767,117 - +0.1 767,117 - -0.3 767,492 + -2.1 767,492 + +0.2 767,492 + -0.2 767,493 - -0.3 767,493 - +1.1 767,493 - +0.0 767,493 - -0.1 767,626 - -0.2 767,639 + -0.2 767,639 + +0.9 767,639 + +0.4 767,639 + -1.0 767,639 + -0.0 767,639 + -0.0 767,640 - +0.1 767,640 - -0.3 767,640 - -0.4 767,640 - +0.0 767,640 - -0.1 767,640 - -0.3 767,640 - +0.2 767,714 + +0.3 767,715 - +0.0 767,715 - +0.6 767,715 - +0.5 767,891 + GFF3856 0.26 +0.1 767,892 - GFF3856 0.26 -1.0 767,892 - GFF3856 0.26 +0.7 768,107 + GFF3856 0.48 -2.1 768,107 + GFF3856 0.48 -0.6 768,107 + GFF3856 0.48 -0.1 768,108 - GFF3856 0.48 -1.5 768,108 - GFF3856 0.48 -0.2 768,108 - GFF3856 0.48 -0.1 768,152 + GFF3856 0.52 +0.0 768,152 + GFF3856 0.52 +0.6 768,153 - GFF3856 0.52 -0.8 768,153 - GFF3856 0.52 +0.3 768,153 - GFF3856 0.52 -0.4 768,153 - GFF3856 0.52 -0.6 768,153 - GFF3856 0.52 -0.5 768,182 + GFF3856 0.55 +0.1 768,183 - GFF3856 0.55 -0.4 768,287 + GFF3856 0.66 +0.2 768,287 + GFF3856 0.66 -0.3 768,288 - GFF3856 0.66 +0.5 768,350 + GFF3856 0.72 +0.5 768,501 - GFF3856 0.88 -1.1 768,738 + -0.3 768,738 + +0.4 768,739 - -0.1 769,279 - GFF3857 0.31 +0.0 769,536 + GFF3857 0.44 +0.0 769,537 - GFF3857 0.44 -0.1 769,617 + GFF3857 0.48 +1.2
Or see this region's nucleotide sequence