Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3784 and GFF3785 are separated by 381 nucleotides GFF3785 and GFF3786 are separated by 10 nucleotides
GFF3784 - Enoyl-CoA hydratase (EC 4.2.1.17), at 682,910 to 683,698
GFF3784
GFF3785 - hypothetical protein, at 684,080 to 684,946
GFF3785
GFF3786 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 684,957 to 686,795
GFF3786
Position (kb) 684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 683.190 kb on + strand, within GFF3784 at 683.191 kb on - strand, within GFF3784 at 683.191 kb on - strand, within GFF3784 at 683.734 kb on + strand at 683.742 kb on + strand at 683.797 kb on - strand at 683.943 kb on + strand at 684.008 kb on + strand at 684.024 kb on + strand at 684.155 kb on + strand at 684.188 kb on + strand, within GFF3785 at 684.188 kb on + strand, within GFF3785 at 684.189 kb on - strand, within GFF3785 at 684.189 kb on - strand, within GFF3785 at 684.233 kb on + strand, within GFF3785 at 684.480 kb on - strand, within GFF3785 at 684.503 kb on + strand, within GFF3785 at 684.504 kb on - strand, within GFF3785 at 684.504 kb on - strand, within GFF3785 at 684.758 kb on + strand, within GFF3785 at 684.759 kb on - strand, within GFF3785 at 684.759 kb on - strand, within GFF3785 at 684.782 kb on + strand, within GFF3785 at 685.296 kb on + strand, within GFF3786 at 685.297 kb on - strand, within GFF3786 at 685.297 kb on - strand, within GFF3786 at 685.647 kb on + strand, within GFF3786 at 685.647 kb on + strand, within GFF3786 at 685.648 kb on - strand, within GFF3786 at 685.648 kb on - strand, within GFF3786 at 685.801 kb on - strand, within GFF3786 at 685.914 kb on + strand, within GFF3786 at 685.915 kb on - strand, within GFF3786
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 683,190 + GFF3784 0.35 -0.6 683,191 - GFF3784 0.36 +0.3 683,191 - GFF3784 0.36 -0.8 683,734 + +0.6 683,742 + +0.1 683,797 - -1.1 683,943 + +0.7 684,008 + -1.4 684,024 + +0.4 684,155 + -2.1 684,188 + GFF3785 0.12 -0.1 684,188 + GFF3785 0.12 -0.6 684,189 - GFF3785 0.13 -0.4 684,189 - GFF3785 0.13 -0.2 684,233 + GFF3785 0.18 -0.2 684,480 - GFF3785 0.46 -0.4 684,503 + GFF3785 0.49 -0.6 684,504 - GFF3785 0.49 -0.1 684,504 - GFF3785 0.49 -0.2 684,758 + GFF3785 0.78 +0.5 684,759 - GFF3785 0.78 -0.9 684,759 - GFF3785 0.78 -1.4 684,782 + GFF3785 0.81 -0.7 685,296 + GFF3786 0.18 +0.6 685,297 - GFF3786 0.18 -0.2 685,297 - GFF3786 0.18 -0.1 685,647 + GFF3786 0.38 +0.3 685,647 + GFF3786 0.38 +0.5 685,648 - GFF3786 0.38 -0.3 685,648 - GFF3786 0.38 -0.1 685,801 - GFF3786 0.46 -0.5 685,914 + GFF3786 0.52 +0.2 685,915 - GFF3786 0.52 +0.0
Or see this region's nucleotide sequence