Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3777 and GFF3778 are separated by 3 nucleotides GFF3778 and GFF3779 are separated by 96 nucleotides
GFF3777 - ABC-type branched-chain amino acid transport systems, ATPase component, at 674,292 to 676,061
GFF3777
GFF3778 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 676,065 to 677,150
GFF3778
GFF3779 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 677,247 to 678,380
GFF3779
Position (kb) 676
677
678 Strain fitness (log2 ratio) -1
0
1
2
3 at 675.161 kb on - strand, within GFF3777 at 675.205 kb on + strand, within GFF3777 at 675.206 kb on - strand, within GFF3777 at 675.206 kb on - strand, within GFF3777 at 675.334 kb on + strand, within GFF3777 at 675.335 kb on - strand, within GFF3777 at 675.452 kb on - strand, within GFF3777 at 675.589 kb on - strand, within GFF3777 at 675.658 kb on + strand, within GFF3777 at 675.659 kb on - strand, within GFF3777 at 675.659 kb on - strand, within GFF3777 at 675.692 kb on - strand, within GFF3777 at 675.694 kb on + strand, within GFF3777 at 675.694 kb on + strand, within GFF3777 at 675.734 kb on - strand, within GFF3777 at 675.949 kb on + strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.950 kb on - strand at 675.961 kb on + strand at 675.961 kb on + strand at 675.961 kb on + strand at 675.962 kb on - strand at 676.678 kb on + strand, within GFF3778 at 676.691 kb on - strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.705 kb on + strand, within GFF3778 at 676.966 kb on + strand, within GFF3778 at 677.047 kb on + strand at 677.048 kb on - strand at 677.048 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.246 kb on - strand at 677.470 kb on + strand, within GFF3779 at 677.470 kb on + strand, within GFF3779 at 677.509 kb on + strand, within GFF3779 at 677.510 kb on - strand, within GFF3779 at 677.522 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 675,161 - GFF3777 0.49 +0.5 675,205 + GFF3777 0.52 +1.0 675,206 - GFF3777 0.52 +0.1 675,206 - GFF3777 0.52 -0.6 675,334 + GFF3777 0.59 -0.5 675,335 - GFF3777 0.59 -0.0 675,452 - GFF3777 0.66 -0.1 675,589 - GFF3777 0.73 +0.5 675,658 + GFF3777 0.77 +0.9 675,659 - GFF3777 0.77 -0.2 675,659 - GFF3777 0.77 -0.7 675,692 - GFF3777 0.79 +0.1 675,694 + GFF3777 0.79 +0.1 675,694 + GFF3777 0.79 +0.2 675,734 - GFF3777 0.81 +0.1 675,949 + +0.3 675,950 - -0.1 675,950 - -0.4 675,950 - +0.3 675,950 - +0.5 675,950 - -0.5 675,961 + -0.9 675,961 + +0.3 675,961 + +0.0 675,962 - -0.2 676,678 + GFF3778 0.56 +1.3 676,691 - GFF3778 0.58 +1.2 676,705 + GFF3778 0.59 +0.6 676,705 + GFF3778 0.59 +1.0 676,966 + GFF3778 0.83 -0.2 677,047 + +0.5 677,048 - +3.1 677,048 - -1.1 677,094 - -0.0 677,094 - +0.8 677,094 - +0.2 677,246 - -0.1 677,470 + GFF3779 0.20 -1.5 677,470 + GFF3779 0.20 +0.6 677,509 + GFF3779 0.23 -0.4 677,510 - GFF3779 0.23 +0.9 677,522 - GFF3779 0.24 -0.0 677,675 - GFF3779 0.38 +0.7 677,675 - GFF3779 0.38 +1.0
Or see this region's nucleotide sequence