Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3752 and GFF3753 are separated by 226 nucleotides GFF3753 and GFF3754 are separated by 149 nucleotides GFF3754 and GFF3755 are separated by 59 nucleotides
GFF3752 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 646,695 to 647,531
GFF3752
GFF3753 - FIG00349159: hypothetical protein, at 647,758 to 647,928
GFF3753
GFF3754 - Transcriptional regulator, MarR family, at 648,078 to 648,560
GFF3754
GFF3755 - Outer membrane component of tripartite multidrug resistance system, at 648,620 to 650,071
GFF3755
Position (kb) 648
649 Strain fitness (log2 ratio) -2
-1
0
1
2 at 647.080 kb on + strand, within GFF3752 at 647.081 kb on - strand, within GFF3752 at 647.081 kb on - strand, within GFF3752 at 647.645 kb on + strand at 647.645 kb on + strand at 647.714 kb on + strand at 647.721 kb on + strand at 647.721 kb on + strand at 647.722 kb on - strand at 647.722 kb on - strand at 647.722 kb on - strand at 647.725 kb on - strand at 647.725 kb on - strand at 647.772 kb on - strand at 648.066 kb on + strand at 648.067 kb on - strand at 648.067 kb on - strand at 648.108 kb on + strand at 648.147 kb on + strand, within GFF3754 at 648.148 kb on - strand, within GFF3754 at 648.180 kb on + strand, within GFF3754 at 648.181 kb on - strand, within GFF3754 at 648.181 kb on - strand, within GFF3754 at 648.511 kb on - strand, within GFF3754 at 648.605 kb on + strand at 648.636 kb on + strand at 649.005 kb on - strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 647,080 + GFF3752 0.46 +0.4 647,081 - GFF3752 0.46 -0.8 647,081 - GFF3752 0.46 -0.2 647,645 + -1.1 647,645 + +0.1 647,714 + -0.1 647,721 + +0.0 647,721 + +1.0 647,722 - +0.2 647,722 - -0.7 647,722 - +0.0 647,725 - -0.5 647,725 - +0.8 647,772 - +0.9 648,066 + +0.2 648,067 - -0.1 648,067 - -0.0 648,108 + +0.2 648,147 + GFF3754 0.14 -0.3 648,148 - GFF3754 0.14 -0.7 648,180 + GFF3754 0.21 +0.8 648,181 - GFF3754 0.21 -0.4 648,181 - GFF3754 0.21 -0.2 648,511 - GFF3754 0.90 -0.1 648,605 + +1.8 648,636 + -0.0 649,005 - GFF3755 0.27 -1.9 649,187 + GFF3755 0.39 +0.1 649,187 + GFF3755 0.39 -0.0 649,187 + GFF3755 0.39 +0.2 649,187 + GFF3755 0.39 +0.2 649,187 + GFF3755 0.39 -0.4 649,187 + GFF3755 0.39 +0.6 649,188 - GFF3755 0.39 -0.1 649,188 - GFF3755 0.39 -0.2 649,188 - GFF3755 0.39 -0.3 649,188 - GFF3755 0.39 -0.6 649,188 - GFF3755 0.39 -0.2
Or see this region's nucleotide sequence