Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF375

Experiment: Ying_Others16 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF373 and GFF374 are separated by 6 nucleotidesGFF374 and GFF375 overlap by 18 nucleotidesGFF375 and GFF376 overlap by 7 nucleotides GFF373 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 36,897 to 37,802 GFF373 GFF374 - hypothetical protein, at 37,809 to 37,922 GFF374 GFF375 - probable iron-sulfur binding protein YPO1417, at 37,905 to 38,792 GFF375 GFF376 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 38,786 to 39,637 GFF376 Position (kb) 37 38 39Strain fitness (log2 ratio) -1 0 1at 37.082 kb on - strand, within GFF373at 37.684 kb on + strand, within GFF373at 37.811 kb on - strandat 37.847 kb on + strand, within GFF374at 38.325 kb on + strand, within GFF375at 38.325 kb on + strand, within GFF375at 38.325 kb on + strand, within GFF375at 38.325 kb on + strand, within GFF375at 38.325 kb on + strand, within GFF375at 38.326 kb on - strand, within GFF375at 38.326 kb on - strand, within GFF375at 38.326 kb on - strand, within GFF375at 38.568 kb on + strand, within GFF375at 38.568 kb on + strand, within GFF375at 38.568 kb on + strand, within GFF375at 38.568 kb on + strand, within GFF375at 38.569 kb on - strand, within GFF375at 38.569 kb on - strand, within GFF375at 38.569 kb on - strand, within GFF375at 38.664 kb on + strand, within GFF375at 38.664 kb on + strand, within GFF375at 38.665 kb on - strand, within GFF375at 38.665 kb on - strand, within GFF375at 38.790 kb on + strandat 38.790 kb on + strandat 38.791 kb on + strandat 38.791 kb on - strandat 38.791 kb on - strandat 38.796 kb on + strandat 38.796 kb on + strandat 38.827 kb on - strandat 38.827 kb on - strandat 38.868 kb on + strandat 38.895 kb on + strand, within GFF376at 38.896 kb on - strand, within GFF376at 39.405 kb on + strand, within GFF376at 39.405 kb on + strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.698 kb on - strandat 39.734 kb on + strandat 39.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
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37,082 - GFF373 0.20 +0.0
37,684 + GFF373 0.87 -0.4
37,811 - -1.2
37,847 + GFF374 0.33 +1.1
38,325 + GFF375 0.47 -0.7
38,325 + GFF375 0.47 -0.1
38,325 + GFF375 0.47 -0.1
38,325 + GFF375 0.47 +0.5
38,325 + GFF375 0.47 -0.5
38,326 - GFF375 0.47 -0.1
38,326 - GFF375 0.47 -0.2
38,326 - GFF375 0.47 -1.1
38,568 + GFF375 0.75 -0.7
38,568 + GFF375 0.75 -0.4
38,568 + GFF375 0.75 -0.4
38,568 + GFF375 0.75 -0.1
38,569 - GFF375 0.75 +0.7
38,569 - GFF375 0.75 -0.7
38,569 - GFF375 0.75 -1.5
38,664 + GFF375 0.85 +0.1
38,664 + GFF375 0.85 -0.5
38,665 - GFF375 0.86 +1.5
38,665 - GFF375 0.86 +0.1
38,790 + -0.0
38,790 + +0.1
38,791 + -0.5
38,791 - -1.1
38,791 - +0.1
38,796 + -0.2
38,796 + +0.5
38,827 - -0.0
38,827 - +0.8
38,868 + +0.7
38,895 + GFF376 0.13 +0.2
38,896 - GFF376 0.13 +0.6
39,405 + GFF376 0.73 -0.1
39,405 + GFF376 0.73 -0.3
39,406 - GFF376 0.73 -0.6
39,406 - GFF376 0.73 +0.1
39,406 - GFF376 0.73 -0.6
39,406 - GFF376 0.73 +0.2
39,698 - +0.5
39,734 + -0.0
39,735 - -0.9

Or see this region's nucleotide sequence