Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3583

Experiment: Ying_Others16 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3582 and GFF3583 are separated by 6 nucleotidesGFF3583 and GFF3584 are separated by 108 nucleotidesGFF3584 and GFF3585 are separated by 18 nucleotidesGFF3585 and GFF3586 overlap by 16 nucleotides GFF3582 - FIG00758123: hypothetical protein, at 469,439 to 470,713 GFF3582 GFF3583 - Alkaline phosphatase (EC 3.1.3.1), at 470,720 to 472,420 GFF3583 GFF3584 - FIG027190: Putative transmembrane protein, at 472,529 to 473,146 GFF3584 GFF3585 - hypothetical protein, at 473,165 to 473,284 GFF3585 GFF3586 - Probable signal peptide protein, at 473,269 to 473,688 GFF3586 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1at 469.796 kb on + strand, within GFF3582at 469.796 kb on + strand, within GFF3582at 469.796 kb on + strand, within GFF3582at 469.796 kb on + strand, within GFF3582at 469.796 kb on + strand, within GFF3582at 469.799 kb on + strand, within GFF3582at 469.799 kb on + strand, within GFF3582at 469.800 kb on - strand, within GFF3582at 469.800 kb on - strand, within GFF3582at 470.066 kb on + strand, within GFF3582at 470.075 kb on + strand, within GFF3582at 470.076 kb on - strand, within GFF3582at 470.076 kb on - strand, within GFF3582at 470.145 kb on - strand, within GFF3582at 470.366 kb on + strand, within GFF3582at 470.366 kb on + strand, within GFF3582at 470.366 kb on + strand, within GFF3582at 470.441 kb on + strand, within GFF3582at 470.442 kb on - strand, within GFF3582at 470.531 kb on + strand, within GFF3582at 470.531 kb on + strand, within GFF3582at 470.541 kb on - strand, within GFF3582at 470.725 kb on - strandat 470.913 kb on + strand, within GFF3583at 470.913 kb on + strand, within GFF3583at 470.914 kb on - strand, within GFF3583at 470.955 kb on + strand, within GFF3583at 470.955 kb on + strand, within GFF3583at 470.955 kb on + strand, within GFF3583at 470.956 kb on - strand, within GFF3583at 471.405 kb on + strand, within GFF3583at 471.406 kb on - strand, within GFF3583at 471.406 kb on - strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.429 kb on + strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.430 kb on - strand, within GFF3583at 471.627 kb on + strand, within GFF3583at 471.627 kb on + strand, within GFF3583at 471.627 kb on + strand, within GFF3583at 471.660 kb on + strand, within GFF3583at 471.660 kb on + strand, within GFF3583at 471.660 kb on + strand, within GFF3583at 471.661 kb on - strand, within GFF3583at 471.701 kb on + strand, within GFF3583at 471.703 kb on - strand, within GFF3583at 471.703 kb on - strand, within GFF3583at 471.703 kb on - strand, within GFF3583at 471.703 kb on - strand, within GFF3583at 471.870 kb on + strand, within GFF3583at 472.213 kb on - strand, within GFF3583at 472.213 kb on - strand, within GFF3583at 472.213 kb on - strand, within GFF3583at 472.254 kb on + strandat 472.255 kb on - strandat 472.459 kb on - strandat 472.890 kb on + strand, within GFF3584at 472.891 kb on - strand, within GFF3584at 473.160 kb on + strandat 473.160 kb on + strandat 473.161 kb on - strandat 473.178 kb on + strand, within GFF3585at 473.179 kb on - strand, within GFF3585at 473.179 kb on - strand, within GFF3585at 473.179 kb on - strand, within GFF3585at 473.205 kb on - strand, within GFF3585at 473.205 kb on - strand, within GFF3585at 473.205 kb on - strand, within GFF3585at 473.235 kb on + strand, within GFF3585at 473.235 kb on + strand, within GFF3585at 473.235 kb on + strand, within GFF3585at 473.236 kb on - strand, within GFF3585at 473.236 kb on - strand, within GFF3585at 473.238 kb on + strand, within GFF3585at 473.238 kb on + strand, within GFF3585at 473.239 kb on - strand, within GFF3585at 473.244 kb on + strand, within GFF3585

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
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469,796 + GFF3582 0.28 +0.1
469,796 + GFF3582 0.28 +1.2
469,796 + GFF3582 0.28 +0.1
469,796 + GFF3582 0.28 -0.8
469,796 + GFF3582 0.28 -0.1
469,799 + GFF3582 0.28 -0.9
469,799 + GFF3582 0.28 +0.3
469,800 - GFF3582 0.28 +0.2
469,800 - GFF3582 0.28 -1.2
470,066 + GFF3582 0.49 -0.0
470,075 + GFF3582 0.50 +0.5
470,076 - GFF3582 0.50 +0.2
470,076 - GFF3582 0.50 -0.7
470,145 - GFF3582 0.55 -0.6
470,366 + GFF3582 0.73 -3.0
470,366 + GFF3582 0.73 -0.0
470,366 + GFF3582 0.73 -0.7
470,441 + GFF3582 0.79 +0.0
470,442 - GFF3582 0.79 +0.6
470,531 + GFF3582 0.86 -0.4
470,531 + GFF3582 0.86 +0.2
470,541 - GFF3582 0.86 -1.1
470,725 - -0.2
470,913 + GFF3583 0.11 +0.7
470,913 + GFF3583 0.11 +0.4
470,914 - GFF3583 0.11 -0.3
470,955 + GFF3583 0.14 +0.7
470,955 + GFF3583 0.14 +0.9
470,955 + GFF3583 0.14 -0.0
470,956 - GFF3583 0.14 +0.7
471,405 + GFF3583 0.40 +0.3
471,406 - GFF3583 0.40 -0.8
471,406 - GFF3583 0.40 +0.1
471,429 + GFF3583 0.42 +0.9
471,429 + GFF3583 0.42 -0.7
471,429 + GFF3583 0.42 -2.0
471,429 + GFF3583 0.42 +0.9
471,429 + GFF3583 0.42 +0.1
471,429 + GFF3583 0.42 +0.2
471,430 - GFF3583 0.42 +0.3
471,430 - GFF3583 0.42 +0.2
471,430 - GFF3583 0.42 +0.2
471,430 - GFF3583 0.42 +0.4
471,430 - GFF3583 0.42 +0.2
471,430 - GFF3583 0.42 -0.5
471,430 - GFF3583 0.42 -0.2
471,627 + GFF3583 0.53 +0.0
471,627 + GFF3583 0.53 -0.6
471,627 + GFF3583 0.53 -0.3
471,660 + GFF3583 0.55 +0.2
471,660 + GFF3583 0.55 +0.5
471,660 + GFF3583 0.55 -1.3
471,661 - GFF3583 0.55 +0.0
471,701 + GFF3583 0.58 -0.1
471,703 - GFF3583 0.58 -0.2
471,703 - GFF3583 0.58 -0.4
471,703 - GFF3583 0.58 -0.1
471,703 - GFF3583 0.58 +0.2
471,870 + GFF3583 0.68 +0.1
472,213 - GFF3583 0.88 -0.4
472,213 - GFF3583 0.88 -0.7
472,213 - GFF3583 0.88 +0.1
472,254 + +0.1
472,255 - -0.2
472,459 - +0.1
472,890 + GFF3584 0.58 -1.2
472,891 - GFF3584 0.59 -0.3
473,160 + -0.4
473,160 + +0.1
473,161 - -0.7
473,178 + GFF3585 0.11 +0.5
473,179 - GFF3585 0.12 +0.4
473,179 - GFF3585 0.12 -0.1
473,179 - GFF3585 0.12 -0.8
473,205 - GFF3585 0.33 -0.9
473,205 - GFF3585 0.33 +1.3
473,205 - GFF3585 0.33 -0.4
473,235 + GFF3585 0.58 -0.4
473,235 + GFF3585 0.58 +0.8
473,235 + GFF3585 0.58 +0.0
473,236 - GFF3585 0.59 -0.3
473,236 - GFF3585 0.59 -0.2
473,238 + GFF3585 0.61 -0.9
473,238 + GFF3585 0.61 -0.6
473,239 - GFF3585 0.62 +0.6
473,244 + GFF3585 0.66 -0.1

Or see this region's nucleotide sequence