Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3390 and GFF3391 are separated by 11 nucleotides GFF3391 and GFF3392 are separated by 475 nucleotides GFF3392 and GFF3393 are separated by 61 nucleotides
GFF3390 - Glucans biosynthesis protein C (EC 2.1.-.-), at 274,542 to 275,717
GFF3390
GFF3391 - hypothetical protein, at 275,729 to 276,061
GFF3391
GFF3392 - hypothetical protein, at 276,537 to 277,115
GFF3392
GFF3393 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 277,177 to 278,652
GFF3393
Position (kb) 276
277
278 Strain fitness (log2 ratio) -1
0
1 at 275.614 kb on - strand at 275.614 kb on - strand at 275.614 kb on - strand at 275.730 kb on + strand at 275.730 kb on + strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.756 kb on + strand at 275.850 kb on + strand, within GFF3391 at 275.850 kb on + strand, within GFF3391 at 275.851 kb on - strand, within GFF3391 at 276.399 kb on + strand at 276.400 kb on - strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.708 kb on + strand, within GFF3392 at 276.718 kb on - strand, within GFF3392 at 277.355 kb on + strand, within GFF3393 at 277.355 kb on + strand, within GFF3393 at 277.356 kb on - strand, within GFF3393 at 277.356 kb on - strand, within GFF3393 at 277.736 kb on + strand, within GFF3393
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 275,614 - -0.0 275,614 - +0.1 275,614 - +0.2 275,730 + -0.1 275,730 + +0.7 275,731 - +0.4 275,731 - +0.2 275,731 - -0.3 275,731 - +0.3 275,731 - -0.3 275,756 + +0.0 275,850 + GFF3391 0.36 +0.2 275,850 + GFF3391 0.36 -0.6 275,851 - GFF3391 0.37 -0.0 276,399 + -0.1 276,400 - +0.1 276,536 + +0.1 276,536 + +0.6 276,536 + +0.0 276,536 + +0.2 276,536 + -0.3 276,536 + -0.2 276,708 + GFF3392 0.30 -0.1 276,718 - GFF3392 0.31 -1.1 277,355 + GFF3393 0.12 -0.4 277,355 + GFF3393 0.12 -0.6 277,356 - GFF3393 0.12 -1.6 277,356 - GFF3393 0.12 -0.1 277,736 + GFF3393 0.38 -0.9
Or see this region's nucleotide sequence