Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3108 and GFF3109 are separated by 12 nucleotides GFF3109 and GFF3110 are separated by 21 nucleotides GFF3110 and GFF3111 are separated by 14 nucleotides GFF3111 and GFF3112 are separated by 7 nucleotides
GFF3108 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 184,551 to 185,618
GFF3108
GFF3109 - Lysine exporter protein (LYSE/YGGA), at 185,631 to 186,269
GFF3109
GFF3110 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 186,291 to 187,340
GFF3110
GFF3111 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 187,355 to 188,155
GFF3111
GFF3112 - Uracil-DNA glycosylase, family 1, at 188,163 to 188,894
GFF3112
Position (kb) 186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.878 kb on - strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.133 kb on - strand, within GFF3109 at 186.975 kb on + strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 187.227 kb on + strand, within GFF3110 at 187.227 kb on + strand, within GFF3110 at 187.228 kb on - strand, within GFF3110 at 187.228 kb on - strand, within GFF3110 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.602 kb on - strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.758 kb on - strand, within GFF3111 at 187.758 kb on - strand, within GFF3111
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 185,709 + GFF3109 0.12 +1.1 185,709 + GFF3109 0.12 +1.3 185,709 + GFF3109 0.12 -0.1 185,709 + GFF3109 0.12 -0.1 185,710 - GFF3109 0.12 -0.4 185,710 - GFF3109 0.12 -0.0 185,710 - GFF3109 0.12 -0.3 185,710 - GFF3109 0.12 +0.3 185,878 - GFF3109 0.39 -0.3 186,132 + GFF3109 0.78 -0.0 186,132 + GFF3109 0.78 +0.8 186,132 + GFF3109 0.78 +0.5 186,133 - GFF3109 0.79 +0.0 186,975 + GFF3110 0.65 +0.0 186,976 - GFF3110 0.65 -4.3 186,976 - GFF3110 0.65 -1.9 186,976 - GFF3110 0.65 -1.5 186,976 - GFF3110 0.65 -2.8 187,227 + GFF3110 0.89 +0.6 187,227 + GFF3110 0.89 -3.2 187,228 - GFF3110 0.89 -3.4 187,228 - GFF3110 0.89 -3.0 187,601 + GFF3111 0.31 -1.4 187,601 + GFF3111 0.31 -1.5 187,601 + GFF3111 0.31 -1.7 187,601 + GFF3111 0.31 -2.6 187,602 - GFF3111 0.31 +0.0 187,757 + GFF3111 0.50 -2.5 187,757 + GFF3111 0.50 -2.9 187,757 + GFF3111 0.50 -3.8 187,757 + GFF3111 0.50 -2.4 187,757 + GFF3111 0.50 -1.2 187,758 - GFF3111 0.50 -2.0 187,758 - GFF3111 0.50 -2.0
Or see this region's nucleotide sequence