Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3059

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
137,609	-				-0.6
137,857	+		GFF3058	0.21	-0.0
137,858	-		GFF3058	0.21	+0.3
138,117	+		GFF3058	0.49	+0.3
138,118	-		GFF3058	0.49	+1.3
138,118	-		GFF3058	0.49	-0.4
138,118	-		GFF3058	0.49	+0.5
138,579	+				-1.5
138,579	+				+0.4
138,580	-				-0.8
138,729	+		GFF3059	0.19	-0.5
138,729	+		GFF3059	0.19	-0.6
138,730	-		GFF3059	0.19	-0.1
138,730	-		GFF3059	0.19	-0.2
138,765	+		GFF3059	0.24	-0.4
138,765	+		GFF3059	0.24	-0.4
138,915	+		GFF3059	0.43	-0.1
138,916	-		GFF3059	0.43	-0.5
139,027	-		GFF3059	0.57	+1.1
139,027	-		GFF3059	0.57	+0.1
139,110	+		GFF3059	0.68	-0.8
139,110	+		GFF3059	0.68	-1.3
139,379	+				+0.1
139,598	+		GFF3060	0.13	-0.5
139,598	+		GFF3060	0.13	-0.2
139,598	+		GFF3060	0.13	-1.5
139,598	+		GFF3060	0.13	-1.4
139,598	+		GFF3060	0.13	-0.9
139,599	-		GFF3060	0.13	-1.3
139,599	-		GFF3060	0.13	-0.9
139,599	-		GFF3060	0.13	-0.0
139,613	+		GFF3060	0.14	-0.7
139,619	+		GFF3060	0.14	-1.0
139,727	+		GFF3060	0.21	+0.2
139,815	-		GFF3060	0.26	-0.5
139,815	-		GFF3060	0.26	-0.5
139,862	+		GFF3060	0.29	+0.6
139,862	+		GFF3060	0.29	-0.7
139,862	+		GFF3060	0.29	-0.7
139,863	-		GFF3060	0.29	-1.4
139,863	-		GFF3060	0.29	-0.6
139,863	-		GFF3060	0.29	-0.8
139,863	-		GFF3060	0.29	-0.2
139,863	-		GFF3060	0.29	-0.9
139,991	+		GFF3060	0.36	-0.9
140,100	-		GFF3060	0.43	-0.1