Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3036

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
111,725	+		GFF3035	0.15	+0.0
112,034	+		GFF3035	0.43	+0.3
112,035	-		GFF3035	0.43	-1.6
112,035	-		GFF3035	0.43	+0.3
112,035	-		GFF3035	0.43	-0.1
112,175	+		GFF3035	0.56	-0.3
112,175	+		GFF3035	0.56	+0.3
112,199	+		GFF3035	0.58	-0.2
112,200	-		GFF3035	0.58	+0.1
112,362	-		GFF3035	0.73	+1.6
112,362	-		GFF3035	0.73	+0.2
112,382	+		GFF3035	0.74	-1.5
112,383	-		GFF3035	0.75	-0.1
112,562	+				+0.2
112,562	+				+0.2
112,662	+				+0.2
112,662	+				+0.0
112,991	+		GFF3036	0.21	+0.4
112,991	-		GFF3036	0.21	+0.4
113,165	-		GFF3036	0.32	+1.0
113,165	-		GFF3036	0.32	+0.2
113,504	-		GFF3036	0.53	+0.1
113,504	-		GFF3036	0.53	-0.6
113,557	+		GFF3036	0.57	-0.4
113,740	+		GFF3036	0.68	+0.4
113,740	+		GFF3036	0.68	+0.5
113,741	-		GFF3036	0.68	-1.4
113,741	-		GFF3036	0.68	+0.0
113,987	-		GFF3036	0.84	+0.5
114,280	+				+1.1
114,280	+				+0.0
114,338	+				+1.0
114,338	+				-1.4
114,339	-				-0.1
114,933	+		GFF3037	0.78	-0.5
114,933	+		GFF3037	0.78	+0.5
114,933	+		GFF3037	0.78	+0.4
114,933	+		GFF3037	0.78	-0.1
114,933	+		GFF3037	0.78	+0.3
114,933	+		GFF3037	0.78	+0.8
114,933	+		GFF3037	0.78	+0.7
114,934	-		GFF3037	0.78	+0.9
114,934	-		GFF3037	0.78	-1.1
114,934	-		GFF3037	0.78	-0.2
114,934	-		GFF3037	0.78	+0.0
114,934	-		GFF3037	0.78	-0.6