Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3034

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
110,278	-		GFF3032	0.76	+1.3
110,709	+				+0.2
110,710	-				+0.6
110,710	-				+1.1
110,710	-				-1.0
110,710	-				+0.8
110,710	-				+1.4
110,747	+				+1.0
110,747	+				-0.1
110,748	-				+0.7
110,901	+		GFF3034	0.18	-0.3
110,902	-		GFF3034	0.18	-1.0
110,902	-		GFF3034	0.18	-0.8
111,117	+		GFF3034	0.44	-0.3
111,117	+		GFF3034	0.44	+0.2
111,117	+		GFF3034	0.44	-0.7
111,117	+		GFF3034	0.44	+0.4
111,118	-		GFF3034	0.44	+1.3
111,725	+		GFF3035	0.15	+0.0
112,034	+		GFF3035	0.43	+0.3
112,035	-		GFF3035	0.43	-1.6
112,035	-		GFF3035	0.43	+0.3
112,035	-		GFF3035	0.43	-0.1
112,175	+		GFF3035	0.56	-0.3
112,175	+		GFF3035	0.56	+0.6
112,175	+		GFF3035	0.56	+0.3
112,199	+		GFF3035	0.58	-0.2
112,200	-		GFF3035	0.58	+0.1
112,362	-		GFF3035	0.73	+1.6
112,362	-		GFF3035	0.73	+0.2
112,382	+		GFF3035	0.74	-1.5
112,383	-		GFF3035	0.75	+1.6
112,383	-		GFF3035	0.75	-0.1
112,562	+				+0.2
112,562	+				+0.2