Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2542 and GFF2543 overlap by 4 nucleotides GFF2543 and GFF2544 are separated by 17 nucleotides GFF2544 and GFF2545 are separated by 10 nucleotides GFF2545 and GFF2546 overlap by 8 nucleotides
GFF2542 - Colanic acid biosysnthesis glycosyl transferase WcaI, at 129,685 to 130,968
GFF2542
GFF2543 - hypothetical protein, at 130,965 to 131,846
GFF2543
GFF2544 - Beta 1,4 glucosyltransferase, at 131,864 to 132,847
GFF2544
GFF2545 - putative NADH dehydrogenase/NAD(P)H nitroreductase, at 132,858 to 133,814
GFF2545
GFF2546 - Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-), at 133,807 to 134,379
GFF2546
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1 at 130.910 kb on + strand at 130.911 kb on - strand at 130.953 kb on - strand at 130.953 kb on - strand at 131.083 kb on + strand, within GFF2543 at 131.083 kb on + strand, within GFF2543 at 131.084 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.185 kb on + strand, within GFF2543 at 131.186 kb on - strand, within GFF2543 at 131.186 kb on - strand, within GFF2543 at 131.263 kb on + strand, within GFF2543 at 131.263 kb on + strand, within GFF2543 at 131.264 kb on - strand, within GFF2543 at 131.264 kb on - strand, within GFF2543 at 131.272 kb on + strand, within GFF2543 at 131.355 kb on + strand, within GFF2543 at 131.377 kb on + strand, within GFF2543 at 131.378 kb on - strand, within GFF2543 at 131.587 kb on + strand, within GFF2543 at 131.588 kb on - strand, within GFF2543 at 131.617 kb on + strand, within GFF2543 at 131.629 kb on + strand, within GFF2543 at 131.629 kb on + strand, within GFF2543 at 131.630 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543 at 132.076 kb on - strand, within GFF2544 at 132.120 kb on + strand, within GFF2544 at 132.121 kb on - strand, within GFF2544 at 132.135 kb on + strand, within GFF2544 at 132.171 kb on + strand, within GFF2544 at 132.172 kb on - strand, within GFF2544 at 132.297 kb on + strand, within GFF2544 at 132.298 kb on - strand, within GFF2544 at 132.298 kb on - strand, within GFF2544 at 132.321 kb on + strand, within GFF2544 at 132.820 kb on - strand at 133.102 kb on + strand, within GFF2545 at 133.102 kb on + strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.240 kb on + strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.528 kb on + strand, within GFF2545 at 133.529 kb on - strand, within GFF2545 at 133.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 130,910 + -0.5 130,911 - -0.1 130,953 - -0.3 130,953 - -0.0 131,083 + GFF2543 0.13 -0.0 131,083 + GFF2543 0.13 +0.2 131,084 - GFF2543 0.13 +0.4 131,117 - GFF2543 0.17 +0.2 131,117 - GFF2543 0.17 -0.5 131,117 - GFF2543 0.17 +0.4 131,185 + GFF2543 0.25 +0.7 131,186 - GFF2543 0.25 -0.7 131,186 - GFF2543 0.25 +0.4 131,263 + GFF2543 0.34 +0.1 131,263 + GFF2543 0.34 +0.3 131,264 - GFF2543 0.34 +0.2 131,264 - GFF2543 0.34 -1.0 131,272 + GFF2543 0.35 -0.3 131,355 + GFF2543 0.44 -0.7 131,377 + GFF2543 0.47 -0.4 131,378 - GFF2543 0.47 -0.2 131,587 + GFF2543 0.71 -0.3 131,588 - GFF2543 0.71 +0.6 131,617 + GFF2543 0.74 -0.1 131,629 + GFF2543 0.75 +0.4 131,629 + GFF2543 0.75 +0.1 131,630 - GFF2543 0.75 +0.4 131,633 - GFF2543 0.76 +0.1 131,633 - GFF2543 0.76 +0.3 131,633 - GFF2543 0.76 -0.2 132,076 - GFF2544 0.22 +0.6 132,120 + GFF2544 0.26 +0.1 132,121 - GFF2544 0.26 +0.3 132,135 + GFF2544 0.28 -0.3 132,171 + GFF2544 0.31 -0.2 132,172 - GFF2544 0.31 -0.6 132,297 + GFF2544 0.44 +0.2 132,298 - GFF2544 0.44 +0.0 132,298 - GFF2544 0.44 -0.4 132,321 + GFF2544 0.46 -0.8 132,820 - -0.0 133,102 + GFF2545 0.25 -0.3 133,102 + GFF2545 0.25 -0.5 133,103 - GFF2545 0.26 -0.2 133,103 - GFF2545 0.26 -0.5 133,240 + GFF2545 0.40 +0.1 133,241 - GFF2545 0.40 -0.0 133,241 - GFF2545 0.40 +0.9 133,528 + GFF2545 0.70 -0.6 133,529 - GFF2545 0.70 -0.4 133,842 - -2.1
Or see this region's nucleotide sequence