Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF237 and GFF238 are separated by 30 nucleotides GFF238 and GFF239 are separated by 28 nucleotides GFF239 and GFF240 overlap by 7 nucleotides GFF240 and GFF241 are separated by 329 nucleotides
GFF237 - Putative secreted protein, at 257,653 to 258,393
GFF237
GFF238 - Enoyl-CoA hydratase (EC 4.2.1.17), at 258,424 to 259,113
GFF238
GFF239 - NAD(P)H-flavin oxidoreductase, at 259,142 to 259,729
GFF239
GFF240 - SlyX protein, at 259,723 to 259,956
GFF240
GFF241 - hypothetical protein, at 260,286 to 260,513
GFF241
Position (kb) 259
260 Strain fitness (log2 ratio) -1
0
1 at 258.301 kb on + strand, within GFF237 at 258.301 kb on + strand, within GFF237 at 258.302 kb on - strand, within GFF237 at 258.411 kb on + strand at 259.184 kb on + strand at 259.560 kb on - strand, within GFF239 at 259.667 kb on + strand, within GFF239 at 259.688 kb on + strand at 259.689 kb on - strand at 259.727 kb on + strand at 259.884 kb on - strand, within GFF240 at 259.884 kb on - strand, within GFF240 at 260.285 kb on + strand at 260.285 kb on + strand at 260.285 kb on + strand at 260.286 kb on - strand at 260.286 kb on - strand at 260.493 kb on + strand at 260.494 kb on - strand at 260.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 258,301 + GFF237 0.87 -0.2 258,301 + GFF237 0.87 -1.6 258,302 - GFF237 0.88 -0.1 258,411 + -0.2 259,184 + -1.3 259,560 - GFF239 0.71 -1.2 259,667 + GFF239 0.89 -0.2 259,688 + -0.4 259,689 - -0.5 259,727 + -0.3 259,884 - GFF240 0.69 +0.3 259,884 - GFF240 0.69 +0.2 260,285 + +0.5 260,285 + -0.6 260,285 + -0.3 260,286 - -0.1 260,286 - -0.5 260,493 + +0.7 260,494 - -0.4 260,494 - +0.4
Or see this region's nucleotide sequence