Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF225 and GFF226 are separated by 33 nucleotides GFF226 and GFF227 are separated by 49 nucleotides GFF227 and GFF228 overlap by 4 nucleotides GFF228 and GFF229 are separated by 57 nucleotides
GFF225 - DinG family ATP-dependent helicase CPE1197, at 246,998 to 249,274
GFF225
GFF226 - hypothetical protein, at 249,308 to 250,111
GFF226
GFF227 - FIG028593: membrane protein, at 250,161 to 250,712
GFF227
GFF228 - Acetyltransferase (EC 2.3.1.-), at 250,709 to 251,230
GFF228
GFF229 - Rrf2 family transcriptional regulator, group III, at 251,288 to 251,761
GFF229
Position (kb) 250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 249.294 kb on + strand at 249.296 kb on + strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.365 kb on + strand at 249.365 kb on + strand at 249.870 kb on - strand, within GFF226 at 249.896 kb on + strand, within GFF226 at 250.231 kb on - strand, within GFF227 at 250.380 kb on + strand, within GFF227 at 250.381 kb on - strand, within GFF227 at 250.744 kb on + strand at 250.744 kb on + strand at 251.066 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.272 kb on + strand at 251.285 kb on + strand at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 249,294 + -0.2 249,296 + +0.2 249,297 - -0.4 249,297 - -0.6 249,297 - +0.8 249,297 - +0.5 249,365 + +0.4 249,365 + +0.1 249,870 - GFF226 0.70 -0.6 249,896 + GFF226 0.73 -0.3 250,231 - GFF227 0.13 +0.5 250,380 + GFF227 0.40 -0.4 250,381 - GFF227 0.40 -0.7 250,744 + -2.5 250,744 + -0.4 251,066 + GFF228 0.68 -0.5 251,126 + GFF228 0.80 +0.2 251,126 + GFF228 0.80 -0.5 251,272 + +0.1 251,285 + -0.1 251,522 + GFF229 0.49 +0.3 251,522 + GFF229 0.49 -0.1 251,522 + GFF229 0.49 -0.3 251,522 + GFF229 0.49 +0.3
Or see this region's nucleotide sequence