Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2200

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,088,211	-				+0.4
1,088,211	-				-1.0
1,088,211	-				-0.8
1,088,262	+				-0.1
1,088,262	+				-0.6
1,088,263	-				-0.1
1,088,589	-		GFF2199	0.33	-0.6
1,088,685	-		GFF2199	0.44	+0.0
1,088,685	-		GFF2199	0.44	-0.7
1,088,819	+		GFF2199	0.59	+0.7
1,088,876	+		GFF2199	0.66	-0.0
1,088,876	+		GFF2199	0.66	+0.2
1,088,876	+		GFF2199	0.66	+1.2
1,088,877	-		GFF2199	0.66	-0.2
1,088,877	-		GFF2199	0.66	+0.1
1,088,877	-		GFF2199	0.66	+0.3
1,088,877	-		GFF2199	0.66	-0.0
1,088,877	-		GFF2199	0.66	-0.2
1,088,877	-		GFF2199	0.66	+0.9
1,089,410	-		GFF2200	0.11	-0.1
1,089,605	-		GFF2200	0.21	-0.1
1,089,644	-		GFF2200	0.23	-0.5
1,089,740	-		GFF2200	0.27	+0.2
1,089,740	-		GFF2200	0.27	-0.1
1,090,537	+		GFF2200	0.66	-0.2
1,090,838	-		GFF2200	0.80	-0.2
1,091,143	+				-1.0
1,091,143	+				+0.0
1,091,535	+		GFF2201	0.43	+0.4
1,091,535	+		GFF2201	0.43	+0.3
1,091,536	-		GFF2201	0.44	-0.3
1,091,832	+		GFF2201	0.88	+0.7
1,091,838	+		GFF2201	0.89	-0.4