Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1869 and GFF1870 overlap by 10 nucleotides GFF1870 and GFF1871 are separated by 2 nucleotides GFF1871 and GFF1872 are separated by 40 nucleotides GFF1872 and GFF1873 are separated by 8 nucleotides
GFF1869 - AmpG permease, at 733,842 to 735,257
GFF1869
GFF1870 - Zn-dependent protease with chaperone function, at 735,248 to 736,153
GFF1870
GFF1871 - Hypothetical metal-binding enzyme, YcbL homolog, at 736,156 to 736,794
GFF1871
GFF1872 - Phenylalanyl-tRNA synthetase beta subunit, at 736,835 to 737,320
GFF1872
GFF1873 - Transcriptional regulator, at 737,329 to 738,240
GFF1873
Position (kb) 736
737 Strain fitness (log2 ratio) -1
0
1 at 735.235 kb on - strand at 735.235 kb on - strand at 735.275 kb on + strand at 735.275 kb on + strand at 735.276 kb on - strand at 735.278 kb on + strand at 735.278 kb on + strand at 735.279 kb on - strand at 735.279 kb on - strand at 735.497 kb on + strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.708 kb on - strand, within GFF1870 at 736.130 kb on + strand at 736.130 kb on + strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.172 kb on + strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.395 kb on + strand, within GFF1871 at 736.396 kb on - strand, within GFF1871 at 736.784 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.820 kb on - strand at 736.820 kb on - strand at 736.838 kb on + strand at 736.838 kb on + strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.919 kb on + strand, within GFF1872 at 736.919 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.124 kb on - strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.783 kb on + strand, within GFF1873
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 735,235 - +0.1 735,235 - -0.1 735,275 + -0.3 735,275 + +1.5 735,276 - +0.1 735,278 + +0.6 735,278 + -0.2 735,279 - -0.3 735,279 - -0.1 735,497 + GFF1870 0.27 +0.7 735,498 - GFF1870 0.28 +0.7 735,498 - GFF1870 0.28 +0.3 735,707 + GFF1870 0.51 -0.5 735,707 + GFF1870 0.51 +0.1 735,707 + GFF1870 0.51 +0.4 735,708 - GFF1870 0.51 +0.3 736,130 + +0.1 736,130 + -0.4 736,131 - +0.5 736,131 - -0.1 736,131 - -0.1 736,172 + +0.6 736,173 - -0.6 736,173 - -0.1 736,173 - +0.2 736,395 + GFF1871 0.37 -0.2 736,396 - GFF1871 0.38 +0.7 736,784 + +0.5 736,819 + -0.2 736,819 + +0.1 736,819 + -1.0 736,819 + -0.9 736,819 + +0.4 736,820 - -0.4 736,820 - +0.5 736,838 + +0.3 736,838 + -0.2 736,839 - +0.3 736,839 - +0.1 736,839 - -0.4 736,839 - -0.5 736,919 + GFF1872 0.17 +0.4 736,919 + GFF1872 0.17 -0.8 737,114 + GFF1872 0.57 -0.4 737,114 + GFF1872 0.57 +0.5 737,115 - GFF1872 0.58 +0.6 737,115 - GFF1872 0.58 +0.7 737,115 - GFF1872 0.58 +0.1 737,123 + GFF1872 0.59 +0.4 737,123 + GFF1872 0.59 -1.3 737,123 + GFF1872 0.59 -0.0 737,124 - GFF1872 0.59 +1.0 737,255 + GFF1872 0.86 -0.2 737,255 + GFF1872 0.86 +0.3 737,256 - GFF1872 0.87 -0.3 737,256 - GFF1872 0.87 -0.4 737,618 + GFF1873 0.32 +0.3 737,618 + GFF1873 0.32 +0.5 737,618 + GFF1873 0.32 -0.2 737,619 - GFF1873 0.32 +0.5 737,619 - GFF1873 0.32 -0.9 737,783 + GFF1873 0.50 +0.5 737,783 + GFF1873 0.50 +0.5
Or see this region's nucleotide sequence