Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1719

Experiment: Ying_Others16 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1717 and GFF1718 are separated by 92 nucleotidesGFF1718 and GFF1719 are separated by 3 nucleotidesGFF1719 and GFF1720 are separated by 6 nucleotides GFF1717 - UPF0225 protein YchJ, at 573,847 to 574,233 GFF1717 GFF1718 - Glutathione S-transferase (EC 2.5.1.18), at 574,326 to 575,030 GFF1718 GFF1719 - Potassium uptake protein TrkH, at 575,034 to 576,494 GFF1719 GFF1720 - Trk system potassium uptake protein TrkA, at 576,501 to 577,892 GFF1720 Position (kb) 575 576 577Strain fitness (log2 ratio) -1 0 1 2at 574.112 kb on + strand, within GFF1717at 574.112 kb on + strand, within GFF1717at 574.113 kb on - strand, within GFF1717at 574.113 kb on - strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.167 kb on - strand, within GFF1717at 574.167 kb on - strand, within GFF1717at 574.167 kb on - strand, within GFF1717at 574.395 kb on + strandat 574.395 kb on + strandat 574.395 kb on + strandat 574.395 kb on + strandat 574.395 kb on + strandat 574.395 kb on + strandat 574.458 kb on + strand, within GFF1718at 574.458 kb on + strand, within GFF1718at 574.458 kb on + strand, within GFF1718at 574.458 kb on + strand, within GFF1718at 574.459 kb on - strand, within GFF1718at 574.611 kb on + strand, within GFF1718at 574.662 kb on + strand, within GFF1718at 574.662 kb on + strand, within GFF1718at 574.663 kb on - strand, within GFF1718at 574.663 kb on - strand, within GFF1718at 574.663 kb on - strand, within GFF1718at 574.755 kb on + strand, within GFF1718at 574.782 kb on + strand, within GFF1718at 574.782 kb on + strand, within GFF1718at 574.783 kb on - strand, within GFF1718at 574.860 kb on + strand, within GFF1718at 574.860 kb on + strand, within GFF1718at 574.860 kb on + strand, within GFF1718at 574.860 kb on + strand, within GFF1718at 574.860 kb on + strand, within GFF1718at 574.914 kb on + strand, within GFF1718at 574.914 kb on + strand, within GFF1718at 574.915 kb on - strand, within GFF1718at 574.915 kb on - strand, within GFF1718at 574.915 kb on - strand, within GFF1718at 574.915 kb on - strand, within GFF1718at 575.281 kb on + strand, within GFF1719at 575.281 kb on + strand, within GFF1719at 575.281 kb on + strand, within GFF1719at 575.281 kb on + strand, within GFF1719at 575.281 kb on + strand, within GFF1719at 575.281 kb on + strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.282 kb on - strand, within GFF1719at 575.293 kb on + strand, within GFF1719at 575.293 kb on + strand, within GFF1719at 575.294 kb on + strand, within GFF1719at 575.294 kb on - strand, within GFF1719at 575.294 kb on - strand, within GFF1719at 575.294 kb on - strand, within GFF1719at 575.294 kb on - strand, within GFF1719at 575.530 kb on + strand, within GFF1719at 575.530 kb on + strand, within GFF1719at 575.531 kb on - strand, within GFF1719at 575.553 kb on + strand, within GFF1719at 575.554 kb on - strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.726 kb on - strand, within GFF1719at 575.797 kb on + strand, within GFF1719at 575.893 kb on + strand, within GFF1719at 575.893 kb on + strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.927 kb on + strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.108 kb on - strand, within GFF1719at 576.108 kb on - strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.367 kb on + strandat 576.368 kb on - strandat 576.368 kb on - strandat 576.368 kb on - strandat 576.400 kb on - strandat 576.490 kb on + strandat 576.890 kb on - strand, within GFF1720at 576.890 kb on - strand, within GFF1720at 577.090 kb on + strand, within GFF1720at 577.090 kb on + strand, within GFF1720at 577.091 kb on - strand, within GFF1720at 577.091 kb on - strand, within GFF1720at 577.330 kb on + strand, within GFF1720

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
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574,112 + GFF1717 0.68 -0.0
574,112 + GFF1717 0.68 +0.1
574,113 - GFF1717 0.69 +0.2
574,113 - GFF1717 0.69 +0.1
574,166 + GFF1717 0.82 -0.8
574,166 + GFF1717 0.82 -0.0
574,166 + GFF1717 0.82 +0.3
574,166 + GFF1717 0.82 +0.1
574,167 - GFF1717 0.83 +1.0
574,167 - GFF1717 0.83 +0.1
574,167 - GFF1717 0.83 +0.5
574,395 + -0.1
574,395 + +0.2
574,395 + +0.3
574,395 + +0.9
574,395 + +0.2
574,395 + -0.7
574,458 + GFF1718 0.19 +1.4
574,458 + GFF1718 0.19 -0.0
574,458 + GFF1718 0.19 -1.3
574,458 + GFF1718 0.19 -0.0
574,459 - GFF1718 0.19 +0.3
574,611 + GFF1718 0.40 -0.1
574,662 + GFF1718 0.48 +0.4
574,662 + GFF1718 0.48 -0.1
574,663 - GFF1718 0.48 +0.5
574,663 - GFF1718 0.48 -0.5
574,663 - GFF1718 0.48 +0.2
574,755 + GFF1718 0.61 -0.3
574,782 + GFF1718 0.65 -0.3
574,782 + GFF1718 0.65 +0.0
574,783 - GFF1718 0.65 +0.3
574,860 + GFF1718 0.76 +0.4
574,860 + GFF1718 0.76 -0.4
574,860 + GFF1718 0.76 +0.4
574,860 + GFF1718 0.76 -0.1
574,860 + GFF1718 0.76 +0.0
574,914 + GFF1718 0.83 +0.1
574,914 + GFF1718 0.83 -0.5
574,915 - GFF1718 0.84 +0.4
574,915 - GFF1718 0.84 -0.1
574,915 - GFF1718 0.84 +0.4
574,915 - GFF1718 0.84 -1.5
575,281 + GFF1719 0.17 -0.1
575,281 + GFF1719 0.17 -0.2
575,281 + GFF1719 0.17 -0.1
575,281 + GFF1719 0.17 +0.4
575,281 + GFF1719 0.17 +0.4
575,281 + GFF1719 0.17 +1.2
575,282 - GFF1719 0.17 +0.7
575,282 - GFF1719 0.17 -0.7
575,282 - GFF1719 0.17 +0.2
575,282 - GFF1719 0.17 -0.3
575,282 - GFF1719 0.17 -0.5
575,282 - GFF1719 0.17 -1.6
575,282 - GFF1719 0.17 +0.1
575,293 + GFF1719 0.18 +0.2
575,293 + GFF1719 0.18 -0.0
575,294 + GFF1719 0.18 +0.4
575,294 - GFF1719 0.18 +0.2
575,294 - GFF1719 0.18 +0.4
575,294 - GFF1719 0.18 +0.3
575,294 - GFF1719 0.18 -0.2
575,530 + GFF1719 0.34 -0.3
575,530 + GFF1719 0.34 -0.4
575,531 - GFF1719 0.34 -0.2
575,553 + GFF1719 0.36 +0.7
575,554 - GFF1719 0.36 +0.2
575,637 + GFF1719 0.41 -0.1
575,637 + GFF1719 0.41 -0.7
575,637 + GFF1719 0.41 -0.0
575,638 - GFF1719 0.41 +0.3
575,638 - GFF1719 0.41 -0.3
575,638 - GFF1719 0.41 +0.0
575,638 - GFF1719 0.41 +0.1
575,638 - GFF1719 0.41 -0.3
575,638 - GFF1719 0.41 -0.2
575,638 - GFF1719 0.41 -0.1
575,662 + GFF1719 0.43 +0.0
575,662 + GFF1719 0.43 -0.2
575,662 + GFF1719 0.43 -0.5
575,662 + GFF1719 0.43 +0.5
575,663 - GFF1719 0.43 +0.4
575,663 - GFF1719 0.43 -0.9
575,663 - GFF1719 0.43 +0.9
575,663 - GFF1719 0.43 -0.1
575,663 - GFF1719 0.43 -1.7
575,663 - GFF1719 0.43 +0.3
575,663 - GFF1719 0.43 +0.5
575,663 - GFF1719 0.43 +0.1
575,663 - GFF1719 0.43 -0.9
575,726 - GFF1719 0.47 -0.0
575,797 + GFF1719 0.52 -0.5
575,893 + GFF1719 0.59 +0.8
575,893 + GFF1719 0.59 +1.0
575,894 - GFF1719 0.59 -0.9
575,894 - GFF1719 0.59 +0.4
575,894 - GFF1719 0.59 -0.3
575,894 - GFF1719 0.59 -0.8
575,926 + GFF1719 0.61 +0.5
575,926 + GFF1719 0.61 +0.1
575,926 + GFF1719 0.61 -0.5
575,926 + GFF1719 0.61 -0.1
575,926 + GFF1719 0.61 +0.6
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.6
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.0
575,926 + GFF1719 0.61 -0.7
575,926 + GFF1719 0.61 +0.4
575,926 + GFF1719 0.61 -0.5
575,926 + GFF1719 0.61 +0.5
575,926 + GFF1719 0.61 +1.1
575,926 + GFF1719 0.61 -1.1
575,926 + GFF1719 0.61 -0.9
575,926 + GFF1719 0.61 +0.0
575,926 + GFF1719 0.61 -1.0
575,926 + GFF1719 0.61 +0.2
575,926 + GFF1719 0.61 +0.4
575,926 + GFF1719 0.61 +2.2
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.4
575,926 + GFF1719 0.61 +1.1
575,927 + GFF1719 0.61 +0.9
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 -0.0
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 -0.0
575,927 - GFF1719 0.61 -1.7
575,927 - GFF1719 0.61 +0.6
575,927 - GFF1719 0.61 -0.5
575,927 - GFF1719 0.61 -0.4
575,927 - GFF1719 0.61 +0.0
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 -0.6
575,927 - GFF1719 0.61 +0.3
575,927 - GFF1719 0.61 +0.5
575,927 - GFF1719 0.61 +0.1
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 +0.1
575,927 - GFF1719 0.61 -0.3
575,927 - GFF1719 0.61 -0.5
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 +1.0
575,927 - GFF1719 0.61 -0.9
575,927 - GFF1719 0.61 +1.0
575,927 - GFF1719 0.61 +1.4
576,107 + GFF1719 0.73 +0.0
576,107 + GFF1719 0.73 -0.2
576,107 + GFF1719 0.73 +0.3
576,108 - GFF1719 0.74 -0.2
576,108 - GFF1719 0.74 +0.1
576,187 + GFF1719 0.79 +0.7
576,187 + GFF1719 0.79 +0.1
576,187 + GFF1719 0.79 +0.4
576,187 + GFF1719 0.79 +0.0
576,188 - GFF1719 0.79 +0.8
576,188 - GFF1719 0.79 +0.0
576,188 - GFF1719 0.79 +0.1
576,367 + -0.7
576,368 - -0.7
576,368 - -0.0
576,368 - -0.1
576,400 - +0.3
576,490 + -0.3
576,890 - GFF1720 0.28 +1.4
576,890 - GFF1720 0.28 +0.7
577,090 + GFF1720 0.42 +0.2
577,090 + GFF1720 0.42 -0.0
577,091 - GFF1720 0.42 +0.5
577,091 - GFF1720 0.42 +0.6
577,330 + GFF1720 0.60 -0.0

Or see this region's nucleotide sequence