Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1699 and GFF1700 are separated by 132 nucleotides GFF1700 and GFF1701 are separated by 0 nucleotides GFF1701 and GFF1702 are separated by 92 nucleotides
GFF1699 - Excinuclease ABC subunit A, dimeric form, at 548,461 to 554,340
GFF1699
GFF1700 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 554,473 to 555,606
GFF1700
GFF1701 - Universal stress protein, at 555,607 to 556,047
GFF1701
GFF1702 - tungsten-containing formate dehydrogenase alpha subunit, at 556,140 to 558,983
GFF1702
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.499 kb on + strand, within GFF1699 at 553.499 kb on + strand, within GFF1699 at 553.499 kb on + strand, within GFF1699 at 553.500 kb on - strand, within GFF1699 at 553.719 kb on - strand, within GFF1699 at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.841 kb on + strand at 553.842 kb on - strand at 554.070 kb on - strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.372 kb on + strand at 554.373 kb on - strand at 554.373 kb on - strand at 554.373 kb on - strand at 554.404 kb on - strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.442 kb on + strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.443 kb on - strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.470 kb on + strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.471 kb on - strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.472 kb on + strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.473 kb on - strand at 554.641 kb on + strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.642 kb on - strand, within GFF1700 at 554.920 kb on + strand, within GFF1700 at 554.920 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.328 kb on + strand, within GFF1700 at 555.329 kb on - strand, within GFF1700 at 555.329 kb on - strand, within GFF1700 at 555.406 kb on + strand, within GFF1700 at 555.407 kb on - strand, within GFF1700 at 555.407 kb on - strand, within GFF1700 at 555.407 kb on - strand, within GFF1700 at 555.502 kb on + strand at 555.502 kb on + strand at 555.503 kb on - strand at 555.503 kb on - strand at 555.503 kb on - strand at 555.529 kb on + strand at 555.529 kb on + strand at 555.529 kb on + strand at 555.530 kb on - strand at 555.530 kb on - strand at 555.530 kb on - strand at 555.761 kb on + strand, within GFF1701 at 555.761 kb on + strand, within GFF1701 at 555.762 kb on - strand, within GFF1701 at 555.875 kb on + strand, within GFF1701 at 555.875 kb on + strand, within GFF1701 at 555.876 kb on - strand, within GFF1701 at 555.876 kb on - strand, within GFF1701 at 555.876 kb on - strand, within GFF1701 at 555.917 kb on + strand, within GFF1701 at 555.918 kb on - strand, within GFF1701 at 556.106 kb on + strand at 556.106 kb on + strand at 556.106 kb on + strand at 556.107 kb on - strand at 556.107 kb on - strand at 556.107 kb on - strand at 556.107 kb on - strand at 556.192 kb on + strand at 556.192 kb on + strand at 556.192 kb on + strand at 556.192 kb on + strand at 556.192 kb on + strand at 556.192 kb on + strand at 556.193 kb on - strand at 556.193 kb on - strand at 556.193 kb on - strand at 556.264 kb on + strand at 556.265 kb on - strand at 556.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 553,499 + GFF1699 0.86 +0.3 553,499 + GFF1699 0.86 +0.1 553,499 + GFF1699 0.86 +0.4 553,500 - GFF1699 0.86 -0.1 553,719 - GFF1699 0.89 +0.3 553,841 + +0.4 553,841 + -0.2 553,841 + -0.2 553,841 + -0.1 553,841 + -0.9 553,841 + -0.9 553,841 + -0.6 553,842 - +1.3 554,070 - +0.6 554,372 + +0.3 554,372 + -0.3 554,372 + +2.1 554,372 + -0.3 554,372 + -0.3 554,372 + -1.2 554,373 - +0.4 554,373 - -1.2 554,373 - +0.3 554,404 - +0.9 554,442 + -0.1 554,442 + +0.5 554,442 + -0.0 554,442 + -0.5 554,443 - -0.1 554,443 - +0.0 554,443 - +0.4 554,443 - +0.5 554,470 + +0.6 554,470 + -0.1 554,470 + -0.6 554,470 + +1.2 554,470 + +0.9 554,471 - +0.3 554,471 - -0.3 554,471 - +0.0 554,471 - -2.2 554,472 + +0.1 554,472 + +0.4 554,472 + -1.3 554,472 + +0.1 554,473 - +0.4 554,473 - +0.6 554,473 - +0.2 554,473 - -1.7 554,641 + GFF1700 0.15 +0.8 554,642 - GFF1700 0.15 +0.1 554,642 - GFF1700 0.15 -0.1 554,642 - GFF1700 0.15 +2.2 554,920 + GFF1700 0.39 +0.3 554,920 + GFF1700 0.39 +1.1 555,328 + GFF1700 0.75 +1.4 555,328 + GFF1700 0.75 -1.8 555,328 + GFF1700 0.75 +0.2 555,329 - GFF1700 0.75 +0.0 555,329 - GFF1700 0.75 +0.3 555,406 + GFF1700 0.82 -0.3 555,407 - GFF1700 0.82 +0.5 555,407 - GFF1700 0.82 -0.1 555,407 - GFF1700 0.82 +0.7 555,502 + -0.7 555,502 + -0.5 555,503 - +0.0 555,503 - +0.7 555,503 - -0.1 555,529 + -0.7 555,529 + -0.2 555,529 + +0.2 555,530 - +0.3 555,530 - +0.1 555,530 - +0.3 555,761 + GFF1701 0.35 +0.0 555,761 + GFF1701 0.35 -2.3 555,762 - GFF1701 0.35 +0.3 555,875 + GFF1701 0.61 -0.5 555,875 + GFF1701 0.61 -0.4 555,876 - GFF1701 0.61 +0.1 555,876 - GFF1701 0.61 -1.2 555,876 - GFF1701 0.61 +0.7 555,917 + GFF1701 0.70 -0.4 555,918 - GFF1701 0.71 +0.5 556,106 + -1.7 556,106 + +1.3 556,106 + +0.1 556,107 - +1.0 556,107 - -0.2 556,107 - +0.2 556,107 - -0.1 556,192 + +0.5 556,192 + -0.8 556,192 + +0.2 556,192 + +0.2 556,192 + +0.5 556,192 + +0.5 556,193 - +1.3 556,193 - +0.3 556,193 - +0.1 556,264 + +0.2 556,265 - -0.2 556,265 - +0.1
Or see this region's nucleotide sequence