Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1658 and GFF1659 are separated by 42 nucleotides GFF1659 and GFF1660 are separated by 7 nucleotides GFF1660 and GFF1661 are separated by 106 nucleotides GFF1661 and GFF1662 overlap by 17 nucleotides
GFF1658 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 510,781 to 511,710
GFF1658
GFF1659 - Probable lipoprotein transmembrane, at 511,753 to 512,457
GFF1659
GFF1660 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 512,465 to 514,837
GFF1660
GFF1661 - Phosphoglycerate mutase (EC 5.4.2.1), at 514,944 to 515,585
GFF1661
GFF1662 - low-specificity D-threonine aldolase, at 515,569 to 516,753
GFF1662
Position (kb) 512
513
514
515 Strain fitness (log2 ratio) -2
-1
0
1 at 511.688 kb on + strand at 511.688 kb on + strand at 511.688 kb on + strand at 511.689 kb on - strand at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.933 kb on + strand, within GFF1659 at 511.933 kb on + strand, within GFF1659 at 511.934 kb on - strand, within GFF1659 at 512.125 kb on + strand, within GFF1659 at 512.125 kb on + strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.134 kb on + strand, within GFF1659 at 512.146 kb on + strand, within GFF1659 at 512.147 kb on - strand, within GFF1659 at 512.200 kb on + strand, within GFF1659 at 512.200 kb on + strand, within GFF1659 at 512.201 kb on - strand, within GFF1659 at 512.201 kb on - strand, within GFF1659 at 512.242 kb on + strand, within GFF1659 at 512.242 kb on + strand, within GFF1659 at 512.243 kb on - strand, within GFF1659 at 512.243 kb on - strand, within GFF1659 at 512.263 kb on + strand, within GFF1659 at 512.266 kb on + strand, within GFF1659 at 512.267 kb on - strand, within GFF1659 at 512.320 kb on + strand, within GFF1659 at 512.321 kb on - strand, within GFF1659 at 512.321 kb on - strand, within GFF1659 at 512.767 kb on - strand, within GFF1660 at 512.815 kb on - strand, within GFF1660 at 512.815 kb on - strand, within GFF1660 at 512.826 kb on + strand, within GFF1660 at 512.826 kb on + strand, within GFF1660 at 512.826 kb on + strand, within GFF1660 at 512.827 kb on - strand, within GFF1660 at 512.827 kb on - strand, within GFF1660 at 512.827 kb on - strand, within GFF1660 at 512.827 kb on - strand, within GFF1660 at 512.827 kb on - strand, within GFF1660 at 512.932 kb on - strand, within GFF1660 at 512.932 kb on - strand, within GFF1660 at 513.132 kb on + strand, within GFF1660 at 514.260 kb on + strand, within GFF1660 at 514.260 kb on + strand, within GFF1660 at 514.260 kb on + strand, within GFF1660 at 514.261 kb on - strand, within GFF1660 at 514.311 kb on + strand, within GFF1660 at 514.311 kb on + strand, within GFF1660 at 514.311 kb on + strand, within GFF1660 at 514.312 kb on - strand, within GFF1660 at 514.344 kb on + strand, within GFF1660 at 514.488 kb on + strand, within GFF1660 at 514.489 kb on - strand, within GFF1660 at 514.489 kb on - strand, within GFF1660 at 514.489 kb on - strand, within GFF1660 at 514.489 kb on - strand, within GFF1660 at 514.492 kb on - strand, within GFF1660 at 514.650 kb on + strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.704 kb on + strand at 514.705 kb on - strand at 515.713 kb on + strand, within GFF1662 at 515.714 kb on - strand, within GFF1662 at 515.714 kb on - strand, within GFF1662
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 511,688 + -0.0 511,688 + -0.8 511,688 + +1.6 511,689 - -2.1 511,837 + GFF1659 0.12 -0.5 511,837 + GFF1659 0.12 +0.5 511,837 + GFF1659 0.12 +0.9 511,837 + GFF1659 0.12 +0.0 511,838 - GFF1659 0.12 +0.3 511,838 - GFF1659 0.12 -0.2 511,838 - GFF1659 0.12 +0.2 511,933 + GFF1659 0.26 -0.0 511,933 + GFF1659 0.26 -0.2 511,934 - GFF1659 0.26 -0.6 512,125 + GFF1659 0.53 +0.2 512,125 + GFF1659 0.53 +0.1 512,126 - GFF1659 0.53 +0.1 512,126 - GFF1659 0.53 -0.9 512,126 - GFF1659 0.53 -0.2 512,134 + GFF1659 0.54 -1.7 512,146 + GFF1659 0.56 -0.2 512,147 - GFF1659 0.56 -1.9 512,200 + GFF1659 0.63 +0.0 512,200 + GFF1659 0.63 +0.1 512,201 - GFF1659 0.64 -0.2 512,201 - GFF1659 0.64 +0.9 512,242 + GFF1659 0.69 +0.3 512,242 + GFF1659 0.69 +0.1 512,243 - GFF1659 0.70 -0.1 512,243 - GFF1659 0.70 -1.2 512,263 + GFF1659 0.72 -0.0 512,266 + GFF1659 0.73 +0.3 512,267 - GFF1659 0.73 +0.2 512,320 + GFF1659 0.80 -0.4 512,321 - GFF1659 0.81 +0.2 512,321 - GFF1659 0.81 -0.8 512,767 - GFF1660 0.13 +0.2 512,815 - GFF1660 0.15 -0.1 512,815 - GFF1660 0.15 -0.1 512,826 + GFF1660 0.15 -0.4 512,826 + GFF1660 0.15 +0.2 512,826 + GFF1660 0.15 -0.7 512,827 - GFF1660 0.15 +0.1 512,827 - GFF1660 0.15 +0.1 512,827 - GFF1660 0.15 +0.6 512,827 - GFF1660 0.15 +0.2 512,827 - GFF1660 0.15 +0.1 512,932 - GFF1660 0.20 +1.5 512,932 - GFF1660 0.20 +1.2 513,132 + GFF1660 0.28 -0.2 514,260 + GFF1660 0.76 -0.4 514,260 + GFF1660 0.76 +0.3 514,260 + GFF1660 0.76 +0.6 514,261 - GFF1660 0.76 +0.3 514,311 + GFF1660 0.78 +0.2 514,311 + GFF1660 0.78 +0.1 514,311 + GFF1660 0.78 +0.2 514,312 - GFF1660 0.78 +0.1 514,344 + GFF1660 0.79 +1.6 514,488 + GFF1660 0.85 -0.2 514,489 - GFF1660 0.85 +0.3 514,489 - GFF1660 0.85 -0.3 514,489 - GFF1660 0.85 -0.0 514,489 - GFF1660 0.85 +0.1 514,492 - GFF1660 0.85 +0.4 514,650 + -0.5 514,651 - +0.3 514,651 - -1.3 514,651 - -0.1 514,651 - +0.3 514,651 - -0.2 514,704 + -0.2 514,705 - +0.4 515,713 + GFF1662 0.12 +0.2 515,714 - GFF1662 0.12 +0.5 515,714 - GFF1662 0.12 +0.2
Or see this region's nucleotide sequence