Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1630 and GFF1631 are separated by 17 nucleotides GFF1631 and GFF1632 are separated by 31 nucleotides GFF1632 and GFF1633 are separated by 41 nucleotides
GFF1630 - FolM Alternative dihydrofolate reductase 1, at 484,355 to 485,143
GFF1630
GFF1631 - Dihydroneopterin aldolase (EC 4.1.2.25), at 485,161 to 485,535
GFF1631
GFF1632 - hypothetical protein, at 485,567 to 486,364
GFF1632
GFF1633 - putative autotransporter protein, at 486,406 to 488,961
GFF1633
Position (kb) 485
486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.847 kb on + strand, within GFF1630 at 484.848 kb on - strand, within GFF1630 at 486.024 kb on + strand, within GFF1632 at 486.024 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.060 kb on + strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.061 kb on - strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.081 kb on + strand, within GFF1632 at 486.082 kb on - strand, within GFF1632 at 486.199 kb on - strand, within GFF1632 at 486.199 kb on - strand, within GFF1632 at 486.241 kb on - strand, within GFF1632 at 486.560 kb on + strand at 486.560 kb on + strand at 486.560 kb on + strand at 486.560 kb on + strand at 486.560 kb on + strand at 486.561 kb on - strand at 486.561 kb on - strand at 486.561 kb on - strand at 486.795 kb on - strand, within GFF1633 at 486.795 kb on - strand, within GFF1633 at 487.163 kb on + strand, within GFF1633 at 487.163 kb on + strand, within GFF1633 at 487.163 kb on + strand, within GFF1633 at 487.164 kb on - strand, within GFF1633
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 484,847 + GFF1630 0.62 +0.3 484,847 + GFF1630 0.62 -0.6 484,847 + GFF1630 0.62 +0.5 484,847 + GFF1630 0.62 -0.0 484,847 + GFF1630 0.62 +0.2 484,847 + GFF1630 0.62 +0.1 484,848 - GFF1630 0.62 +1.4 486,024 + GFF1632 0.57 +0.4 486,024 + GFF1632 0.57 +0.1 486,060 + GFF1632 0.62 +1.6 486,060 + GFF1632 0.62 +0.6 486,060 + GFF1632 0.62 +0.4 486,060 + GFF1632 0.62 -0.3 486,060 + GFF1632 0.62 +1.4 486,061 - GFF1632 0.62 +0.6 486,061 - GFF1632 0.62 +0.4 486,061 - GFF1632 0.62 +0.0 486,081 + GFF1632 0.64 -0.8 486,081 + GFF1632 0.64 -1.9 486,081 + GFF1632 0.64 -0.2 486,081 + GFF1632 0.64 -0.7 486,081 + GFF1632 0.64 +0.3 486,082 - GFF1632 0.65 +0.3 486,199 - GFF1632 0.79 +0.1 486,199 - GFF1632 0.79 +0.9 486,241 - GFF1632 0.84 -0.1 486,560 + -0.1 486,560 + +0.5 486,560 + +0.4 486,560 + -0.2 486,560 + +0.0 486,561 - +0.8 486,561 - +0.2 486,561 - -0.4 486,795 - GFF1633 0.15 -0.4 486,795 - GFF1633 0.15 +0.3 487,163 + GFF1633 0.30 +0.5 487,163 + GFF1633 0.30 +1.0 487,163 + GFF1633 0.30 +0.5 487,164 - GFF1633 0.30 +0.6
Or see this region's nucleotide sequence