Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1601

Experiment: Ying_Others16 rep A; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1600 and GFF1601 are separated by 88 nucleotidesGFF1601 and GFF1602 are separated by 6 nucleotides GFF1600 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 455,386 to 456,804 GFF1600 GFF1601 - lipoprotein, putative, at 456,893 to 457,717 GFF1601 GFF1602 - Arsenic efflux pump protein, at 457,724 to 459,004 GFF1602 Position (kb) 456 457 458Strain fitness (log2 ratio) -1 0 1at 456.941 kb on + strandat 456.942 kb on - strandat 456.966 kb on - strandat 457.073 kb on + strand, within GFF1601at 457.073 kb on + strand, within GFF1601at 457.361 kb on + strand, within GFF1601at 457.362 kb on - strand, within GFF1601at 457.577 kb on + strand, within GFF1601at 457.577 kb on + strand, within GFF1601at 457.577 kb on - strand, within GFF1601at 457.578 kb on - strand, within GFF1601at 457.578 kb on - strand, within GFF1601at 457.578 kb on - strand, within GFF1601at 457.679 kb on + strandat 457.725 kb on + strandat 458.454 kb on + strand, within GFF1602at 458.455 kb on - strand, within GFF1602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
remove
456,941 + -1.4
456,942 - -0.7
456,966 - +0.3
457,073 + GFF1601 0.22 -0.1
457,073 + GFF1601 0.22 +0.4
457,361 + GFF1601 0.57 +0.8
457,362 - GFF1601 0.57 +0.2
457,577 + GFF1601 0.83 -0.1
457,577 + GFF1601 0.83 +0.1
457,577 - GFF1601 0.83 -0.2
457,578 - GFF1601 0.83 +0.5
457,578 - GFF1601 0.83 -0.4
457,578 - GFF1601 0.83 -0.4
457,679 + -1.0
457,725 + +0.4
458,454 + GFF1602 0.57 +0.1
458,455 - GFF1602 0.57 -0.5

Or see this region's nucleotide sequence