Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1380

Experiment: Ying_Others16 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1379 and GFF1380 are separated by 8 nucleotidesGFF1380 and GFF1381 are separated by 9 nucleotidesGFF1381 and GFF1382 are separated by 84 nucleotides GFF1379 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 234,698 to 236,302 GFF1379 GFF1380 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 236,311 to 237,408 GFF1380 GFF1381 - General secretion pathway protein C, at 237,418 to 237,924 GFF1381 GFF1382 - General secretion pathway protein G, at 238,009 to 238,479 GFF1382 Position (kb) 236 237 238Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.638 kb on - strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.279 kb on + strandat 236.280 kb on - strandat 236.598 kb on + strand, within GFF1380at 236.599 kb on - strand, within GFF1380at 237.187 kb on + strand, within GFF1380at 237.188 kb on - strand, within GFF1380at 237.244 kb on + strand, within GFF1380at 237.244 kb on + strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.552 kb on - strand, within GFF1381at 237.632 kb on + strand, within GFF1381at 237.632 kb on + strand, within GFF1381at 237.633 kb on - strand, within GFF1381at 237.925 kb on - strandat 237.935 kb on + strandat 237.935 kb on + strandat 237.935 kb on + strandat 237.935 kb on + strandat 237.935 kb on + strandat 237.936 kb on - strandat 237.936 kb on - strandat 238.231 kb on + strand, within GFF1382at 238.232 kb on - strand, within GFF1382at 238.330 kb on + strand, within GFF1382at 238.370 kb on - strand, within GFF1382at 238.375 kb on + strand, within GFF1382at 238.375 kb on + strand, within GFF1382at 238.375 kb on + strand, within GFF1382at 238.375 kb on + strand, within GFF1382at 238.375 kb on + strand, within GFF1382at 238.376 kb on - strand, within GFF1382

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2
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235,337 + GFF1379 0.40 -3.1
235,337 + GFF1379 0.40 -2.1
235,337 + GFF1379 0.40 -2.0
235,337 + GFF1379 0.40 -2.6
235,337 + GFF1379 0.40 -1.0
235,337 + GFF1379 0.40 -2.9
235,338 - GFF1379 0.40 -1.5
235,338 - GFF1379 0.40 -2.6
235,338 - GFF1379 0.40 -3.3
235,338 - GFF1379 0.40 -1.8
235,338 - GFF1379 0.40 -1.9
235,338 - GFF1379 0.40 -1.7
235,527 - GFF1379 0.52 -1.8
235,527 - GFF1379 0.52 +1.0
235,527 - GFF1379 0.52 -2.5
235,638 - GFF1379 0.59 -1.1
235,670 + GFF1379 0.61 -2.6
235,670 + GFF1379 0.61 -2.7
235,670 + GFF1379 0.61 -1.8
235,670 + GFF1379 0.61 -1.7
235,670 + GFF1379 0.61 -1.5
235,670 + GFF1379 0.61 -0.4
235,670 + GFF1379 0.61 -2.9
235,670 + GFF1379 0.61 -3.1
235,670 + GFF1379 0.61 -1.3
235,671 - GFF1379 0.61 -2.9
235,671 - GFF1379 0.61 -1.7
235,671 - GFF1379 0.61 -3.1
235,671 - GFF1379 0.61 -1.9
235,671 - GFF1379 0.61 -2.0
235,671 - GFF1379 0.61 -2.2
235,671 - GFF1379 0.61 -2.2
235,671 - GFF1379 0.61 -1.4
235,671 - GFF1379 0.61 -2.3
235,671 - GFF1379 0.61 -3.2
235,671 - GFF1379 0.61 -2.0
235,862 + GFF1379 0.73 -3.3
235,862 + GFF1379 0.73 -2.8
235,862 + GFF1379 0.73 -1.2
235,862 + GFF1379 0.73 -2.7
235,863 - GFF1379 0.73 -2.6
235,863 - GFF1379 0.73 -2.3
235,863 - GFF1379 0.73 -2.7
235,863 - GFF1379 0.73 -2.2
236,252 + -1.6
236,252 + -2.6
236,252 + -2.1
236,252 + -3.1
236,252 + -2.4
236,253 - -1.6
236,253 - -2.4
236,253 - -4.8
236,253 - -1.8
236,279 + -2.8
236,280 - -3.7
236,598 + GFF1380 0.26 +0.4
236,599 - GFF1380 0.26 +0.4
237,187 + GFF1380 0.80 -0.4
237,188 - GFF1380 0.80 -0.6
237,244 + GFF1380 0.85 +1.0
237,244 + GFF1380 0.85 -0.2
237,245 - GFF1380 0.85 +0.4
237,245 - GFF1380 0.85 +0.1
237,245 - GFF1380 0.85 -0.4
237,245 - GFF1380 0.85 -0.1
237,552 - GFF1381 0.26 -1.4
237,632 + GFF1381 0.42 -0.1
237,632 + GFF1381 0.42 -0.8
237,633 - GFF1381 0.42 -0.1
237,925 - -0.6
237,935 + -0.0
237,935 + +1.4
237,935 + +0.2
237,935 + +0.0
237,935 + -0.2
237,936 - -0.3
237,936 - +1.3
238,231 + GFF1382 0.47 -1.2
238,232 - GFF1382 0.47 -0.6
238,330 + GFF1382 0.68 -0.1
238,370 - GFF1382 0.77 +0.5
238,375 + GFF1382 0.78 -0.7
238,375 + GFF1382 0.78 -0.3
238,375 + GFF1382 0.78 -0.1
238,375 + GFF1382 0.78 -0.2
238,375 + GFF1382 0.78 -0.3
238,376 - GFF1382 0.78 -0.1

Or see this region's nucleotide sequence