Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1341 and GFF1342 are separated by 177 nucleotides GFF1342 and GFF1343 overlap by 1 nucleotides GFF1343 and GFF1344 are separated by 62 nucleotides
GFF1341 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 193,830 to 195,119
GFF1341
GFF1342 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 195,297 to 196,079
GFF1342
GFF1343 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 196,079 to 196,789
GFF1343
GFF1344 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 196,852 to 198,045
GFF1344
Position (kb) 196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.210 kb on + strand at 195.210 kb on + strand at 195.211 kb on - strand at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.760 kb on - strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.121 kb on + strand at 196.329 kb on - strand, within GFF1343 at 196.436 kb on + strand, within GFF1343 at 196.436 kb on + strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.637 kb on + strand, within GFF1343 at 196.637 kb on + strand, within GFF1343 at 196.638 kb on - strand, within GFF1343 at 196.697 kb on + strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.836 kb on + strand at 196.836 kb on + strand at 196.837 kb on - strand at 196.966 kb on + strand at 196.966 kb on + strand at 196.966 kb on + strand at 197.209 kb on + strand, within GFF1344 at 197.209 kb on + strand, within GFF1344 at 197.210 kb on - strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.275 kb on + strand, within GFF1344 at 197.276 kb on - strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.281 kb on + strand, within GFF1344 at 197.365 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.659 kb on + strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.660 kb on - strand, within GFF1344 at 197.767 kb on + strand, within GFF1344 at 197.768 kb on - strand, within GFF1344 at 197.768 kb on - strand, within GFF1344 at 197.785 kb on + strand, within GFF1344 at 197.785 kb on + strand, within GFF1344 at 197.786 kb on - strand, within GFF1344
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 195,208 + -0.0 195,208 + +0.4 195,208 + +0.7 195,208 + -0.5 195,208 + -0.3 195,208 + +1.1 195,208 + +0.1 195,209 - +0.3 195,209 - +0.6 195,209 - +0.5 195,209 - -0.1 195,210 + -0.0 195,210 + +0.3 195,211 - +1.2 195,645 + GFF1342 0.44 -0.1 195,645 + GFF1342 0.44 -1.3 195,645 + GFF1342 0.44 +0.5 195,646 - GFF1342 0.45 +0.2 195,646 - GFF1342 0.45 -0.2 195,759 + GFF1342 0.59 -0.1 195,759 + GFF1342 0.59 +0.3 195,760 - GFF1342 0.59 +0.3 195,999 + GFF1342 0.90 +1.6 195,999 + GFF1342 0.90 +0.7 195,999 + GFF1342 0.90 -0.7 196,038 + -0.3 196,038 + +0.3 196,038 + -0.4 196,038 + +0.1 196,038 + -0.9 196,039 - +0.3 196,039 - +1.1 196,039 - +0.4 196,039 - +0.7 196,039 - -0.2 196,039 - +0.8 196,121 + +0.3 196,329 - GFF1343 0.35 +0.4 196,436 + GFF1343 0.50 -1.8 196,436 + GFF1343 0.50 -0.1 196,437 - GFF1343 0.50 +2.1 196,437 - GFF1343 0.50 -0.8 196,437 - GFF1343 0.50 +1.0 196,637 + GFF1343 0.78 +0.3 196,637 + GFF1343 0.78 +0.9 196,638 - GFF1343 0.79 -0.1 196,697 + GFF1343 0.87 +1.6 196,698 - GFF1343 0.87 +0.2 196,698 - GFF1343 0.87 +0.8 196,698 - GFF1343 0.87 +0.4 196,836 + +0.6 196,836 + +0.3 196,837 - +0.5 196,966 + +0.8 196,966 + -0.8 196,966 + -0.2 197,209 + GFF1344 0.30 +0.0 197,209 + GFF1344 0.30 +0.2 197,210 - GFF1344 0.30 -0.0 197,275 + GFF1344 0.35 -0.3 197,275 + GFF1344 0.35 +1.1 197,275 + GFF1344 0.35 +0.6 197,276 - GFF1344 0.36 -0.1 197,281 + GFF1344 0.36 -0.2 197,281 + GFF1344 0.36 +0.2 197,281 + GFF1344 0.36 +2.1 197,365 + GFF1344 0.43 +0.8 197,659 + GFF1344 0.68 -0.2 197,659 + GFF1344 0.68 +1.2 197,659 + GFF1344 0.68 +0.2 197,660 - GFF1344 0.68 -0.8 197,660 - GFF1344 0.68 -0.4 197,660 - GFF1344 0.68 +2.6 197,767 + GFF1344 0.77 -0.0 197,768 - GFF1344 0.77 -0.2 197,768 - GFF1344 0.77 +0.2 197,785 + GFF1344 0.78 +0.0 197,785 + GFF1344 0.78 -0.3 197,786 - GFF1344 0.78 -0.2
Or see this region's nucleotide sequence