Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1207 and GFF1208 are separated by 156 nucleotides GFF1208 and GFF1209 are separated by 14 nucleotides GFF1209 and GFF1210 are separated by 9 nucleotides
GFF1207 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 70,307 to 71,398
GFF1207
GFF1208 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 71,555 to 73,609
GFF1208
GFF1209 - Probable transmembrane protein, at 73,624 to 74,364
GFF1209
GFF1210 - Probable lipoprotein, at 74,374 to 74,886
GFF1210
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -1
0
1 at 71.400 kb on + strand at 71.430 kb on - strand at 71.465 kb on - strand at 73.750 kb on + strand, within GFF1209 at 73.750 kb on + strand, within GFF1209 at 73.918 kb on + strand, within GFF1209 at 73.919 kb on - strand, within GFF1209 at 73.919 kb on - strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.489 kb on + strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.502 kb on - strand, within GFF1210 at 74.525 kb on + strand, within GFF1210
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 71,400 + -0.4 71,430 - -0.6 71,465 - +0.4 73,750 + GFF1209 0.17 -0.1 73,750 + GFF1209 0.17 +0.1 73,918 + GFF1209 0.40 +0.2 73,919 - GFF1209 0.40 -1.2 73,919 - GFF1209 0.40 -0.4 74,146 + GFF1209 0.70 -0.3 74,146 + GFF1209 0.70 -0.3 74,146 + GFF1209 0.70 -0.2 74,146 + GFF1209 0.70 +0.1 74,146 + GFF1209 0.70 +0.6 74,146 + GFF1209 0.70 -0.1 74,146 + GFF1209 0.70 -0.9 74,147 - GFF1209 0.71 +0.3 74,147 - GFF1209 0.71 -0.9 74,147 - GFF1209 0.71 -0.4 74,147 - GFF1209 0.71 +0.0 74,489 + GFF1210 0.22 -0.1 74,490 - GFF1210 0.23 -0.2 74,490 - GFF1210 0.23 -0.3 74,501 + GFF1210 0.25 +0.4 74,501 + GFF1210 0.25 -0.1 74,501 + GFF1210 0.25 -0.5 74,502 - GFF1210 0.25 +1.4 74,525 + GFF1210 0.29 -0.1
Or see this region's nucleotide sequence