Strain Fitness in Escherichia fergusonii Becca around EFB2_01596

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
1,670,899	+		EFB2_01595	0.34	+0.7
1,670,899	+		EFB2_01595	0.34	+1.0
1,670,899	+		EFB2_01595	0.34	+2.6
1,670,899	+		EFB2_01595	0.34	+0.4
1,670,899	+		EFB2_01595	0.34	+0.6
1,670,899	+		EFB2_01595	0.34	-0.4
1,670,899	+		EFB2_01595	0.34	-0.5
1,670,899	+		EFB2_01595	0.34	+1.0
1,670,899	+		EFB2_01595	0.34	+0.3
1,670,899	+		EFB2_01595	0.34	-0.8
1,670,899	+		EFB2_01595	0.34	-0.4
1,670,899	+		EFB2_01595	0.34	-0.7
1,670,899	+		EFB2_01595	0.34	-1.2
1,670,900	-		EFB2_01595	0.34	+1.0
1,670,900	-		EFB2_01595	0.34	-0.1
1,670,900	-		EFB2_01595	0.34	-1.3
1,670,900	-		EFB2_01595	0.34	+0.6
1,670,900	-		EFB2_01595	0.34	+0.4
1,670,900	-		EFB2_01595	0.34	-0.3
1,670,900	-		EFB2_01595	0.34	-1.1
1,670,900	-		EFB2_01595	0.34	-1.1
1,670,900	-		EFB2_01595	0.34	-3.0
1,670,900	-		EFB2_01595	0.34	-0.5
1,670,933	+		EFB2_01595	0.37	+0.0
1,671,009	+		EFB2_01595	0.42	+0.6
1,671,009	+		EFB2_01595	0.42	+2.2
1,671,009	+		EFB2_01595	0.42	+0.2
1,671,009	+		EFB2_01595	0.42	-0.8
1,671,009	+		EFB2_01595	0.42	+0.0
1,671,009	+		EFB2_01595	0.42	+1.2
1,671,009	+		EFB2_01595	0.42	-0.3
1,671,009	+		EFB2_01595	0.42	+0.7
1,671,009	+		EFB2_01595	0.42	-1.2
1,671,009	+		EFB2_01595	0.42	+0.5
1,671,009	+		EFB2_01595	0.42	+0.3
1,671,009	+		EFB2_01595	0.42	-1.3
1,671,009	+		EFB2_01595	0.42	-0.4
1,671,010	-		EFB2_01595	0.42	-0.3
1,671,010	-		EFB2_01595	0.42	-0.0
1,671,010	-		EFB2_01595	0.42	-0.4
1,671,010	-		EFB2_01595	0.42	+0.4
1,671,010	-		EFB2_01595	0.42	+0.2
1,671,010	-		EFB2_01595	0.42	+0.6
1,671,010	-		EFB2_01595	0.42	-0.1
1,671,010	-		EFB2_01595	0.42	+0.1
1,671,010	-		EFB2_01595	0.42	-2.4
1,671,010	-		EFB2_01595	0.42	-0.7
1,671,010	-		EFB2_01595	0.42	-1.1
1,671,025	+		EFB2_01595	0.44	-0.3
1,671,025	+		EFB2_01595	0.44	-1.9
1,671,025	+		EFB2_01595	0.44	-0.9
1,671,025	+		EFB2_01595	0.44	+0.8
1,671,025	+		EFB2_01595	0.44	-1.8
1,671,025	+		EFB2_01595	0.44	+0.6
1,671,025	+		EFB2_01595	0.44	-1.5
1,671,025	+		EFB2_01595	0.44	+0.4
1,671,025	+		EFB2_01595	0.44	-0.9
1,671,025	+		EFB2_01595	0.44	+1.5
1,671,025	+		EFB2_01595	0.44	+0.9
1,671,026	-		EFB2_01595	0.44	-1.8
1,671,026	-		EFB2_01595	0.44	-0.8
1,671,026	-		EFB2_01595	0.44	+0.9
1,671,026	-		EFB2_01595	0.44	-2.9
1,671,026	-		EFB2_01595	0.44	+0.5
1,671,026	-		EFB2_01595	0.44	+1.1
1,671,026	-		EFB2_01595	0.44	-0.6
1,671,054	+		EFB2_01595	0.46	-0.6
1,671,055	-		EFB2_01595	0.46	+2.9
1,671,055	-		EFB2_01595	0.46	+1.0
1,671,087	+		EFB2_01595	0.48	-0.5
1,671,088	-		EFB2_01595	0.48	+2.2
1,671,088	-		EFB2_01595	0.48	+0.2
1,671,088	-		EFB2_01595	0.48	+2.2
1,671,138	+		EFB2_01595	0.52	+0.4
1,671,138	+		EFB2_01595	0.52	+0.5
1,671,138	+		EFB2_01595	0.52	+1.0
1,671,164	+		EFB2_01595	0.54	-0.5
1,671,164	+		EFB2_01595	0.54	-0.9
1,671,239	-		EFB2_01595	0.59	+0.4
1,671,366	+		EFB2_01595	0.69	+1.0
1,671,366	+		EFB2_01595	0.69	-0.8
1,671,367	-		EFB2_01595	0.69	-3.4
1,671,367	-		EFB2_01595	0.69	-1.5
1,671,407	+		EFB2_01595	0.72	-1.8
1,671,407	+		EFB2_01595	0.72	-1.3
1,671,407	+		EFB2_01595	0.72	-1.6
1,671,407	+		EFB2_01595	0.72	-0.7
1,671,407	+		EFB2_01595	0.72	+0.0
1,671,407	+		EFB2_01595	0.72	-0.3
1,671,408	-		EFB2_01595	0.72	+0.2
1,671,408	-		EFB2_01595	0.72	-2.0
1,671,408	-		EFB2_01595	0.72	-2.1
1,671,408	-		EFB2_01595	0.72	+2.2
1,671,408	-		EFB2_01595	0.72	-1.1
1,671,408	-		EFB2_01595	0.72	-2.7
1,671,408	-		EFB2_01595	0.72	-3.2
1,671,408	-		EFB2_01595	0.72	-0.5
1,671,408	-		EFB2_01595	0.72	+1.6
1,671,408	-		EFB2_01595	0.72	-2.1
1,671,411	+		EFB2_01595	0.72	-0.6
1,671,411	+		EFB2_01595	0.72	+0.1
1,671,411	+		EFB2_01595	0.72	-0.5
1,671,411	+		EFB2_01595	0.72	-2.1
1,671,411	+		EFB2_01595	0.72	-1.7
1,671,411	+		EFB2_01595	0.72	-2.0
1,671,411	+		EFB2_01595	0.72	-0.1
1,671,411	+		EFB2_01595	0.72	-0.3
1,671,412	-		EFB2_01595	0.72	-0.8
1,671,456	+		EFB2_01595	0.75	-2.4
1,671,456	+		EFB2_01595	0.75	+0.1
1,671,456	+		EFB2_01595	0.75	+0.2
1,671,457	-		EFB2_01595	0.75	+0.5
1,671,457	-		EFB2_01595	0.75	-1.0
1,671,457	-		EFB2_01595	0.75	+0.9
1,671,485	+		EFB2_01595	0.78	-2.7
1,671,485	+		EFB2_01595	0.78	+0.3
1,671,485	+		EFB2_01595	0.78	+2.2
1,671,486	-		EFB2_01595	0.78	-0.1
1,671,486	-		EFB2_01595	0.78	-3.0
1,671,486	-		EFB2_01595	0.78	-0.8
1,671,486	-		EFB2_01595	0.78	+0.9
1,671,486	-		EFB2_01595	0.78	-0.7
1,671,489	+		EFB2_01595	0.78	-1.4
1,671,489	+		EFB2_01595	0.78	+0.2
1,671,489	+		EFB2_01595	0.78	-2.1
1,671,490	-		EFB2_01595	0.78	-1.7
1,671,490	-		EFB2_01595	0.78	+1.5
1,671,543	+		EFB2_01595	0.82	+0.7
1,671,544	-		EFB2_01595	0.82	+0.2
1,671,544	-		EFB2_01595	0.82	-1.0
1,671,544	-		EFB2_01595	0.82	-0.3
1,671,544	-		EFB2_01595	0.82	-1.0
1,671,631	+		EFB2_01595	0.88	-0.8
1,671,631	+		EFB2_01595	0.88	+1.4
1,671,631	+		EFB2_01595	0.88	+0.1
1,671,631	+		EFB2_01595	0.88	-0.4
1,671,631	+		EFB2_01595	0.88	+2.2
1,671,632	-		EFB2_01595	0.88	-2.4
1,671,632	-		EFB2_01595	0.88	+1.3
1,671,632	-		EFB2_01595	0.88	+0.1
1,671,632	-		EFB2_01595	0.88	+0.6
1,671,632	-		EFB2_01595	0.88	+0.6
1,671,632	-		EFB2_01595	0.88	+1.8
1,671,632	-		EFB2_01595	0.88	+0.6
1,671,632	-		EFB2_01595	0.88	-1.2
1,671,672	+				-1.7
1,671,672	+				+0.0
1,671,673	-				-1.3
1,671,673	-				-0.6
1,671,673	-				-1.1
1,671,738	+				+2.1
1,671,762	-				-1.1
1,671,787	+				+0.9
1,671,787	+				-0.9
1,671,788	-				-1.9
1,671,788	-				-0.2
1,671,788	-				+2.2
1,671,788	-				+0.8
1,671,788	-				+0.1
1,671,791	+				-0.1
1,671,791	+				-0.6
1,671,792	-				+0.0
1,671,792	-				+0.7
1,671,792	-				-1.0
1,671,837	+				-1.8
1,671,838	-				+1.4
1,671,846	+				-0.8
1,671,847	-				-1.2
1,671,853	+				+0.1
1,671,931	+		EFB2_01596	0.12	-2.0
1,671,931	+		EFB2_01596	0.12	-0.1
1,671,932	-		EFB2_01596	0.12	-0.7
1,671,940	+		EFB2_01596	0.15	+0.3
1,671,940	+		EFB2_01596	0.15	+0.9
1,671,940	+		EFB2_01596	0.15	+0.8
1,671,941	-		EFB2_01596	0.16	-2.1
1,671,951	+		EFB2_01596	0.19	+0.3
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	-0.8
1,671,951	+		EFB2_01596	0.19	-1.0
1,671,951	+		EFB2_01596	0.19	-1.5
1,671,951	+		EFB2_01596	0.19	-0.8
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	-0.7
1,671,951	+		EFB2_01596	0.19	-0.3
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	+1.8
1,671,951	+		EFB2_01596	0.19	+2.1
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	-0.0
1,671,951	+		EFB2_01596	0.19	-0.1
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	-1.0
1,671,951	+		EFB2_01596	0.19	+0.4
1,671,951	+		EFB2_01596	0.19	+2.0
1,671,951	+		EFB2_01596	0.19	-1.3
1,671,951	+		EFB2_01596	0.19	-0.3
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.4
1,671,951	+		EFB2_01596	0.19	-0.3
1,671,951	+		EFB2_01596	0.19	-0.4
1,671,951	+		EFB2_01596	0.19	-3.1
1,671,951	+		EFB2_01596	0.19	-0.8
1,671,951	+		EFB2_01596	0.19	-0.3
1,671,951	+		EFB2_01596	0.19	-0.2
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	+0.9
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	-1.3
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	-1.6
1,671,951	+		EFB2_01596	0.19	+2.9
1,671,951	+		EFB2_01596	0.19	-0.1
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	-1.8
1,671,951	+		EFB2_01596	0.19	+0.8
1,671,951	+		EFB2_01596	0.19	-0.7
1,671,951	+		EFB2_01596	0.19	+1.9
1,671,951	+		EFB2_01596	0.19	+2.3
1,671,951	+		EFB2_01596	0.19	-0.1
1,671,951	+		EFB2_01596	0.19	+0.4
1,671,951	+		EFB2_01596	0.19	-1.3
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	+0.5
1,671,951	+		EFB2_01596	0.19	-2.1
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.3
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,952	-		EFB2_01596	0.20	+2.2
1,671,952	-		EFB2_01596	0.20	+1.6
1,671,952	-		EFB2_01596	0.20	+2.4
1,671,952	-		EFB2_01596	0.20	-0.1
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	-1.6
1,671,952	-		EFB2_01596	0.20	+0.2
1,671,952	-		EFB2_01596	0.20	-1.0
1,671,952	-		EFB2_01596	0.20	-0.6
1,671,952	-		EFB2_01596	0.20	+0.6
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	-2.0
1,671,952	-		EFB2_01596	0.20	+1.0
1,671,952	-		EFB2_01596	0.20	+0.2
1,671,952	-		EFB2_01596	0.20	-1.1
1,671,952	-		EFB2_01596	0.20	-2.3
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	-1.7
1,671,952	-		EFB2_01596	0.20	+0.1
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	-2.0
1,671,952	-		EFB2_01596	0.20	-1.2
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	+1.5
1,671,952	-		EFB2_01596	0.20	+0.3
1,671,952	-		EFB2_01596	0.20	-1.6
1,671,952	-		EFB2_01596	0.20	+1.9
1,671,952	-		EFB2_01596	0.20	+0.3
1,671,952	-		EFB2_01596	0.20	-2.6
1,671,952	-		EFB2_01596	0.20	+0.3
1,671,952	-		EFB2_01596	0.20	+1.1
1,671,952	-		EFB2_01596	0.20	-0.8
1,671,952	-		EFB2_01596	0.20	+0.1
1,671,952	-		EFB2_01596	0.20	+0.4
1,671,952	-		EFB2_01596	0.20	-2.3
1,671,952	-		EFB2_01596	0.20	+1.7
1,671,952	-		EFB2_01596	0.20	+0.2
1,671,952	-		EFB2_01596	0.20	-0.9
1,671,952	-		EFB2_01596	0.20	-0.3
1,671,952	-		EFB2_01596	0.20	+1.1
1,671,952	-		EFB2_01596	0.20	-1.0
1,671,955	+		EFB2_01596	0.21	-0.3
1,671,955	+		EFB2_01596	0.21	-1.9
1,671,955	+		EFB2_01596	0.21	-1.0
1,671,955	+		EFB2_01596	0.21	+0.4
1,671,955	+		EFB2_01596	0.21	+0.6
1,671,955	+		EFB2_01596	0.21	-1.3
1,671,955	+		EFB2_01596	0.21	+1.5
1,671,955	+		EFB2_01596	0.21	+0.3
1,671,955	+		EFB2_01596	0.21	+1.1
1,671,956	-		EFB2_01596	0.21	+0.3
1,671,956	-		EFB2_01596	0.21	-1.6
1,671,956	-		EFB2_01596	0.21	-0.1
1,671,956	-		EFB2_01596	0.21	+0.5
1,671,956	-		EFB2_01596	0.21	-0.3
1,671,956	-		EFB2_01596	0.21	-0.1
1,671,956	-		EFB2_01596	0.21	-0.3
1,671,956	-		EFB2_01596	0.21	-2.1
1,671,956	-		EFB2_01596	0.21	+2.4
1,671,956	-		EFB2_01596	0.21	-2.1
1,671,956	-		EFB2_01596	0.21	+1.1
1,671,956	-		EFB2_01596	0.21	-0.4
1,671,956	-		EFB2_01596	0.21	+0.4
1,672,032	+		EFB2_01596	0.50	+1.3
1,672,032	+		EFB2_01596	0.50	+1.7
1,672,033	-		EFB2_01596	0.50	+0.2
1,672,033	-		EFB2_01596	0.50	-0.4
1,672,058	+		EFB2_01596	0.60	+1.3
1,672,058	+		EFB2_01596	0.60	-1.0
1,672,058	+		EFB2_01596	0.60	+0.5
1,672,058	+		EFB2_01596	0.60	+0.3
1,672,058	+		EFB2_01596	0.60	-0.6
1,672,059	-		EFB2_01596	0.60	-0.9
1,672,063	+		EFB2_01596	0.61	+0.4
1,672,063	+		EFB2_01596	0.61	+0.3
1,672,063	+		EFB2_01596	0.61	-1.1
1,672,063	+		EFB2_01596	0.61	-0.3
1,672,064	-		EFB2_01596	0.62	-0.8
1,672,064	-		EFB2_01596	0.62	-1.8
1,672,064	-		EFB2_01596	0.62	-0.2
1,672,064	-		EFB2_01596	0.62	-1.1
1,672,064	-		EFB2_01596	0.62	-0.6
1,672,064	-		EFB2_01596	0.62	-2.3
1,672,064	-		EFB2_01596	0.62	-0.3
1,672,066	+		EFB2_01596	0.63	+0.1
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