Strain Fitness in Escherichia fergusonii Becca around EFB2_01399

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
1,463,219	+				+1.4
1,463,219	+				-0.6
1,463,219	+				+0.6
1,463,220	-				-1.4
1,463,220	-				+1.8
1,463,220	-				-2.2
1,463,220	-				+0.3
1,463,220	-				-1.2
1,463,220	-				+0.1
1,463,220	-				+2.1
1,463,220	-				-0.5
1,463,220	-				-0.5
1,463,220	-				-0.5
1,463,255	+				+2.2
1,463,255	+				+0.4
1,463,257	+				-0.9
1,463,257	+				-0.1
1,463,258	-				+2.2
1,463,258	-				-1.1
1,463,258	-				+1.5
1,463,258	-				-0.1
1,463,258	-				-1.7
1,463,274	-				+1.5
1,463,281	+				-0.9
1,463,281	+				+0.2
1,463,281	+				-0.8
1,463,281	+				-0.4
1,463,281	+				-1.4
1,463,282	-				-0.9
1,463,282	-				-1.4
1,463,282	-				-2.9
1,463,282	-				-0.8
1,463,319	-				-1.2
1,463,386	+				-2.4
1,463,386	+				-1.8
1,463,386	+				-1.6
1,463,386	+				-1.1
1,463,386	+				-0.4
1,463,386	+				-0.8
1,463,386	+				-1.4
1,463,386	+				+2.2
1,463,386	+				+1.0
1,463,387	-				-1.4
1,463,387	-				-2.1
1,463,387	-				-0.8
1,463,387	-				-2.8
1,463,387	-				-2.6
1,463,387	-				+0.3
1,463,387	-				-1.5
1,463,387	-				-1.4
1,463,387	-				+2.9
1,463,387	-				+1.2
1,463,387	-				-1.4
1,463,387	-				-2.2
1,463,387	-				-0.8
1,463,387	-				+0.4
1,463,387	-				-0.4
1,463,387	-				+0.9
1,463,387	-				-0.4
1,463,387	-				-0.6
1,463,387	-				-1.4
1,463,387	-				-0.0
1,463,388	+				+1.8
1,463,388	+				-0.9
1,463,388	+				+0.0
1,463,388	+				-0.6
1,463,388	+				+0.2
1,463,389	-				-1.9
1,463,415	+				-0.0
1,463,416	-				-0.1
1,463,416	-				-0.4
1,463,416	-				+2.0
1,463,426	-				+0.8
1,463,447	+				+0.2
1,463,450	+				+0.7
1,463,450	+				-1.0
1,463,451	-				+0.2
1,463,451	-				-2.2
1,463,451	-				+0.9
1,463,451	-				-0.9
1,463,451	-				-1.9
1,463,480	+				+0.1
1,463,480	+				-1.9
1,463,480	+				+0.6
1,463,480	+				-0.0
1,463,480	+				+0.7
1,463,480	+				-0.4
1,463,480	+				+1.3
1,463,480	+				-0.3
1,463,480	+				+0.5
1,463,481	-				+1.1
1,463,481	-				-0.9
1,463,481	-				-1.3
1,463,481	-				-0.1
1,463,481	-				-0.5
1,463,481	-				+0.6
1,463,481	-				+0.2
1,463,481	-				-0.4
1,463,481	-				+1.6
1,463,481	-				-1.4
1,463,481	-				-0.3
1,463,481	-				-0.1
1,463,481	-				-0.1
1,463,481	-				+0.0
1,463,481	-				+0.9
1,463,481	-				+1.6
1,463,481	-				-2.5
1,463,481	-				-0.2
1,463,481	-				-1.7
1,463,522	+				+0.3
1,463,522	+				-0.3
1,463,522	+				+1.1
1,463,523	-				-0.1
1,463,523	-				-0.4
1,463,523	-				-1.6
1,463,523	-				+0.1
1,463,523	-				+0.0
1,463,563	+				+0.1
1,463,563	+				+0.4
1,463,563	+				+0.3
1,463,564	-				-0.1
1,463,567	+				-0.5
1,463,567	+				+0.6
1,463,568	-				+0.0
1,463,568	-				+1.3
1,463,568	-				-2.6
1,463,568	-				+0.8
1,463,578	+				-0.7
1,463,578	+				-0.3
1,463,579	-				-0.9
1,463,579	-				-0.5
1,463,594	-				-0.4
1,463,672	+		EFB2_01398	0.15	-0.4
1,463,672	+		EFB2_01398	0.15	-2.5
1,463,672	+		EFB2_01398	0.15	+0.9
1,463,672	+		EFB2_01398	0.15	+0.3
1,463,673	-		EFB2_01398	0.15	-0.9
1,463,686	+		EFB2_01398	0.17	+0.3
1,463,687	-		EFB2_01398	0.17	+1.0
1,463,690	+		EFB2_01398	0.18	+0.8
1,463,690	+		EFB2_01398	0.18	-1.1
1,463,690	+		EFB2_01398	0.18	-0.0
1,463,690	+		EFB2_01398	0.18	-2.4
1,463,691	-		EFB2_01398	0.18	-0.1
1,463,691	-		EFB2_01398	0.18	-2.0
1,463,691	-		EFB2_01398	0.18	-1.5
1,463,691	-		EFB2_01398	0.18	-1.5
1,463,691	-		EFB2_01398	0.18	-0.4
1,463,691	-		EFB2_01398	0.18	-0.8
1,463,691	-		EFB2_01398	0.18	+0.0
1,463,691	-		EFB2_01398	0.18	+0.7
1,463,736	-		EFB2_01398	0.25	+0.7
1,463,748	+		EFB2_01398	0.27	-2.2
1,463,749	-		EFB2_01398	0.27	-0.3
1,463,766	+		EFB2_01398	0.30	+0.1
1,463,767	-		EFB2_01398	0.30	-1.0
1,463,816	+		EFB2_01398	0.37	-1.9
1,463,816	+		EFB2_01398	0.37	+0.8
1,463,816	+		EFB2_01398	0.37	+0.2
1,463,816	+		EFB2_01398	0.37	+0.7
1,463,816	+		EFB2_01398	0.37	+0.7
1,463,816	+		EFB2_01398	0.37	-0.2
1,463,817	-		EFB2_01398	0.38	-1.3
1,463,817	-		EFB2_01398	0.38	-0.9
1,463,817	-		EFB2_01398	0.38	-1.0
1,463,817	-		EFB2_01398	0.38	-0.5
1,463,817	-		EFB2_01398	0.38	+0.9
1,463,817	-		EFB2_01398	0.38	-0.9
1,463,817	-		EFB2_01398	0.38	+0.4
1,463,862	+		EFB2_01398	0.45	+0.3
1,463,862	+		EFB2_01398	0.45	+0.1
1,463,872	+		EFB2_01398	0.46	-2.2
1,463,917	+		EFB2_01398	0.53	-2.6
1,463,917	+		EFB2_01398	0.53	-0.9
1,463,917	+		EFB2_01398	0.53	+0.5
1,463,917	+		EFB2_01398	0.53	-0.7
1,463,918	-		EFB2_01398	0.53	-1.5
1,463,918	-		EFB2_01398	0.53	+0.0
1,463,918	-		EFB2_01398	0.53	-0.2
1,463,918	-		EFB2_01398	0.53	+0.9
1,463,951	+		EFB2_01398	0.59	+0.2
1,463,952	-		EFB2_01398	0.59	+1.0
1,463,952	-		EFB2_01398	0.59	+2.0
1,463,952	-		EFB2_01398	0.59	-1.0
1,463,983	+		EFB2_01398	0.64	-0.8
1,463,983	+		EFB2_01398	0.64	+0.1
1,463,983	+		EFB2_01398	0.64	-0.4
1,463,983	+		EFB2_01398	0.64	-0.2
1,463,983	+		EFB2_01398	0.64	+0.8
1,463,983	+		EFB2_01398	0.64	-0.6
1,463,983	+		EFB2_01398	0.64	+0.2
1,463,983	+		EFB2_01398	0.64	-0.3
1,463,983	+		EFB2_01398	0.64	-0.1
1,463,983	+		EFB2_01398	0.64	+1.0
1,463,983	+		EFB2_01398	0.64	-0.8
1,463,983	+		EFB2_01398	0.64	-0.1
1,463,983	+		EFB2_01398	0.64	-1.1
1,463,983	+		EFB2_01398	0.64	+0.5
1,463,983	+		EFB2_01398	0.64	-1.1
1,463,983	+		EFB2_01398	0.64	+0.5
1,463,983	+		EFB2_01398	0.64	+0.4
1,463,983	+		EFB2_01398	0.64	-0.0
1,463,983	+		EFB2_01398	0.64	+0.7
1,463,983	+		EFB2_01398	0.64	+0.1
1,463,983	+		EFB2_01398	0.64	-2.4
1,463,983	+		EFB2_01398	0.64	+1.9
1,463,983	+		EFB2_01398	0.64	-0.4
1,463,983	+		EFB2_01398	0.64	-1.1
1,463,983	+		EFB2_01398	0.64	-0.2
1,463,983	+		EFB2_01398	0.64	-2.7
1,463,983	+		EFB2_01398	0.64	-0.8
1,463,983	+		EFB2_01398	0.64	-1.1
1,463,983	+		EFB2_01398	0.64	+1.1
1,463,983	+		EFB2_01398	0.64	-0.4
1,463,983	+		EFB2_01398	0.64	-1.2
1,463,983	+		EFB2_01398	0.64	+2.0
1,463,983	+		EFB2_01398	0.64	-0.4
1,463,983	+		EFB2_01398	0.64	+0.6
1,463,983	+		EFB2_01398	0.64	-3.3
1,463,983	+		EFB2_01398	0.64	+0.2
1,463,983	+		EFB2_01398	0.64	+1.2
1,463,983	+		EFB2_01398	0.64	-0.5
1,463,983	+		EFB2_01398	0.64	-1.0
1,463,983	+		EFB2_01398	0.64	-0.7
1,463,983	+		EFB2_01398	0.64	+0.5
1,463,984	-		EFB2_01398	0.64	-0.5
1,463,984	-		EFB2_01398	0.64	+0.5
1,463,984	-		EFB2_01398	0.64	-0.6
1,463,984	-		EFB2_01398	0.64	+0.6
1,463,984	-		EFB2_01398	0.64	-0.1
1,463,984	-		EFB2_01398	0.64	-0.5
1,463,984	-		EFB2_01398	0.64	+0.3
1,463,984	-		EFB2_01398	0.64	+1.8
1,463,984	-		EFB2_01398	0.64	+1.7
1,463,984	-		EFB2_01398	0.64	+0.0
1,463,984	-		EFB2_01398	0.64	-0.3
1,463,984	-		EFB2_01398	0.64	+0.4
1,463,984	-		EFB2_01398	0.64	-1.4
1,463,984	-		EFB2_01398	0.64	+0.3
1,463,984	-		EFB2_01398	0.64	+0.2
1,463,984	-		EFB2_01398	0.64	-0.4
1,463,984	-		EFB2_01398	0.64	+0.6
1,463,984	-		EFB2_01398	0.64	-0.2
1,463,984	-		EFB2_01398	0.64	+0.6
1,463,984	-		EFB2_01398	0.64	-1.2
1,463,984	-		EFB2_01398	0.64	+0.6
1,463,984	-		EFB2_01398	0.64	+1.5
1,463,984	-		EFB2_01398	0.64	+1.1
1,463,984	-		EFB2_01398	0.64	+0.4
1,463,984	-		EFB2_01398	0.64	-0.1
1,463,984	-		EFB2_01398	0.64	-0.8
1,463,984	-		EFB2_01398	0.64	-2.0
1,463,984	-		EFB2_01398	0.64	+1.2
1,463,984	-		EFB2_01398	0.64	-0.6
1,463,984	-		EFB2_01398	0.64	-0.1
1,463,984	-		EFB2_01398	0.64	+1.6
1,463,984	-		EFB2_01398	0.64	-0.6
1,463,984	-		EFB2_01398	0.64	+0.9
1,463,984	-		EFB2_01398	0.64	-0.5
1,463,984	-		EFB2_01398	0.64	-3.4
1,463,984	-		EFB2_01398	0.64	+1.2
1,463,984	-		EFB2_01398	0.64	-1.4
1,463,984	-		EFB2_01398	0.64	-0.6
1,463,984	-		EFB2_01398	0.64	-0.3
1,463,984	-		EFB2_01398	0.64	-1.2
1,463,984	-		EFB2_01398	0.64	-0.1
1,463,984	-		EFB2_01398	0.64	+0.4
1,463,984	-		EFB2_01398	0.64	-0.8
1,463,984	-		EFB2_01398	0.64	+1.0
1,463,984	-		EFB2_01398	0.64	+0.7
1,463,984	-		EFB2_01398	0.64	-0.7
1,463,984	-		EFB2_01398	0.64	-0.2
1,463,984	-		EFB2_01398	0.64	+1.4
1,463,984	-		EFB2_01398	0.64	-0.9
1,463,984	-		EFB2_01398	0.64	+0.6
1,463,984	-		EFB2_01398	0.64	+0.5
1,464,016	+		EFB2_01398	0.69	+0.1
1,464,016	+		EFB2_01398	0.69	-0.1
1,464,016	+		EFB2_01398	0.69	-0.4
1,464,016	+		EFB2_01398	0.69	+0.7
1,464,016	+		EFB2_01398	0.69	+0.9
1,464,016	+		EFB2_01398	0.69	-0.8
1,464,017	-		EFB2_01398	0.69	+1.5
1,464,017	-		EFB2_01398	0.69	-3.1
1,464,017	-		EFB2_01398	0.69	-0.5
1,464,017	-		EFB2_01398	0.69	+0.1
1,464,017	-		EFB2_01398	0.69	-1.9
1,464,053	+		EFB2_01398	0.74	-0.0
1,464,053	+		EFB2_01398	0.74	+0.5
1,464,053	+		EFB2_01398	0.74	+0.1
1,464,053	+		EFB2_01398	0.74	+0.9
1,464,053	+		EFB2_01398	0.74	-1.1
1,464,053	+		EFB2_01398	0.74	+1.3
1,464,054	-		EFB2_01398	0.75	+1.2
1,464,054	-		EFB2_01398	0.75	+1.1
1,464,054	-		EFB2_01398	0.75	+0.7
1,464,054	-		EFB2_01398	0.75	-2.0
1,464,054	-		EFB2_01398	0.75	-0.5
1,464,054	-		EFB2_01398	0.75	-2.0
1,464,107	+		EFB2_01398	0.83	-0.7
1,464,108	-		EFB2_01398	0.83	+2.3
1,464,108	-		EFB2_01398	0.83	-0.7
1,464,164	+				+1.2
1,464,164	+				-0.2
1,464,164	+				+0.2
1,464,164	+				+1.2
1,464,165	-				-0.0
1,464,165	-				-2.5
1,464,165	-				+0.4
1,464,179	+				+0.8
1,464,179	+				+1.5
1,464,197	+				-0.8
1,464,197	+				-0.5
1,464,197	+				+0.6
1,464,198	-				-0.4
1,464,198	-				+2.0
1,464,198	-				-1.2
1,464,198	-				+0.6
1,464,198	-				-0.3
1,464,198	-				+1.2
1,464,198	-				-1.1
1,464,198	-				-1.1
1,464,198	-				+0.1
1,464,198	-				+0.8
1,464,198	-				+0.8
1,464,198	-				-0.3
1,464,198	-				+0.3
1,464,209	+				-0.5
1,464,209	+				-1.4
1,464,209	+				-1.6
1,464,210	-				-0.0
1,464,210	-				-0.3
1,464,210	-				+0.5
1,464,210	-				-1.8
1,464,210	-				-0.8
1,464,210	-				-0.1
1,464,210	-				+0.4
1,464,210	-				+0.7
1,464,217	-				+0.4
1,464,217	-				+1.1
1,464,260	-				-0.5
1,464,337	+		EFB2_01399	0.12	+0.7
1,464,338	-		EFB2_01399	0.12	+0.5
1,464,344	-		EFB2_01399	0.12	-0.4
1,464,369	+		EFB2_01399	0.15	+0.7
1,464,369	+		EFB2_01399	0.15	-0.2
1,464,369	+		EFB2_01399	0.15	-1.4
1,464,369	+		EFB2_01399	0.15	-1.6
1,464,370	-		EFB2_01399	0.15	-0.8
1,464,370	-		EFB2_01399	0.15	+1.0
1,464,391	+		EFB2_01399	0.17	+0.6
1,464,391	+		EFB2_01399	0.17	+0.1
1,464,391	+		EFB2_01399	0.17	+0.2
1,464,391	+		EFB2_01399	0.17	-2.1
1,464,391	+		EFB2_01399	0.17	+1.4
1,464,391	+		EFB2_01399	0.17	-0.2
1,464,391	+		EFB2_01399	0.17	+0.9
1,464,391	+		EFB2_01399	0.17	-0.8
1,464,392	-		EFB2_01399	0.17	+1.1
1,464,392	-		EFB2_01399	0.17	-2.1
1,464,392	-		EFB2_01399	0.17	-1.2
1,464,392	-		EFB2_01399	0.17	+0.6
1,464,461	-		EFB2_01399	0.24	-1.8
1,464,461	-		EFB2_01399	0.24	-0.4
1,464,461	-		EFB2_01399	0.24	-0.9
1,464,461	-		EFB2_01399	0.24	-1.1
1,464,463	+		EFB2_01399	0.24	+1.2
1,464,463	+		EFB2_01399	0.24	+0.0
1,464,463	+		EFB2_01399	0.24	+1.0
1,464,463	+		EFB2_01399	0.24	-2.3
1,464,463	+		EFB2_01399	0.24	-0.2
1,464,463	+		EFB2_01399	0.24	-0.4
1,464,463	+		EFB2_01399	0.24	-0.0
1,464,463	+		EFB2_01399	0.24	+0.5
1,464,463	+		EFB2_01399	0.24	+0.6
1,464,464	-		EFB2_01399	0.24	-3.2
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