Strain Fitness in Escherichia fergusonii Becca around EFB2_00898

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEFB2_00897 and EFB2_00898 are separated by 110 nucleotidesEFB2_00898 and EFB2_00899 are separated by 310 nucleotides EFB2_00897: EFB2_00897 - Pectate disaccharide-lyase, at 923,567 to 925,801 _00897 EFB2_00898: EFB2_00898 - hypothetical protein, at 925,912 to 926,874 _00898 EFB2_00899: EFB2_00899 - hypothetical protein, at 927,185 to 927,622 _00899 Position (kb) 925 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 924.969 kb on + strand, within EFB2_00897at 924.970 kb on - strand, within EFB2_00897at 925.023 kb on - strand, within EFB2_00897at 925.032 kb on + strand, within EFB2_00897at 925.039 kb on + strand, within EFB2_00897at 925.045 kb on + strand, within EFB2_00897at 925.045 kb on + strand, within EFB2_00897at 925.139 kb on - strand, within EFB2_00897at 925.143 kb on + strand, within EFB2_00897at 925.168 kb on + strand, within EFB2_00897at 925.216 kb on - strand, within EFB2_00897at 925.258 kb on + strand, within EFB2_00897at 925.288 kb on + strand, within EFB2_00897at 925.361 kb on + strand, within EFB2_00897at 925.362 kb on - strand, within EFB2_00897at 925.362 kb on - strand, within EFB2_00897at 925.381 kb on - strand, within EFB2_00897at 925.460 kb on - strand, within EFB2_00897at 925.469 kb on - strand, within EFB2_00897at 925.527 kb on + strand, within EFB2_00897at 925.660 kb on + strandat 925.660 kb on + strandat 925.661 kb on - strandat 925.661 kb on - strandat 925.756 kb on + strandat 925.865 kb on + strandat 925.908 kb on + strandat 925.933 kb on - strandat 925.935 kb on - strandat 925.944 kb on - strandat 925.958 kb on + strandat 925.980 kb on - strandat 926.039 kb on - strand, within EFB2_00898at 926.040 kb on + strand, within EFB2_00898at 926.043 kb on + strand, within EFB2_00898at 926.044 kb on - strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.096 kb on - strand, within EFB2_00898at 926.096 kb on - strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.101 kb on + strand, within EFB2_00898at 926.184 kb on + strand, within EFB2_00898at 926.185 kb on - strand, within EFB2_00898at 926.199 kb on - strand, within EFB2_00898at 926.243 kb on - strand, within EFB2_00898at 926.258 kb on + strand, within EFB2_00898at 926.258 kb on + strand, within EFB2_00898at 926.263 kb on + strand, within EFB2_00898at 926.268 kb on + strand, within EFB2_00898at 926.269 kb on - strand, within EFB2_00898at 926.286 kb on + strand, within EFB2_00898at 926.326 kb on + strand, within EFB2_00898at 926.328 kb on + strand, within EFB2_00898at 926.346 kb on - strand, within EFB2_00898at 926.352 kb on - strand, within EFB2_00898at 926.352 kb on - strand, within EFB2_00898at 926.354 kb on - strand, within EFB2_00898at 926.354 kb on - strand, within EFB2_00898at 926.355 kb on + strand, within EFB2_00898at 926.355 kb on + strand, within EFB2_00898at 926.356 kb on - strand, within EFB2_00898at 926.356 kb on - strand, within EFB2_00898at 926.420 kb on - strand, within EFB2_00898at 926.503 kb on - strand, within EFB2_00898at 926.534 kb on - strand, within EFB2_00898at 926.570 kb on - strand, within EFB2_00898at 926.610 kb on + strand, within EFB2_00898at 926.610 kb on + strand, within EFB2_00898at 926.639 kb on + strand, within EFB2_00898at 926.644 kb on + strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.657 kb on - strand, within EFB2_00898at 926.657 kb on - strand, within EFB2_00898at 926.659 kb on - strand, within EFB2_00898at 926.685 kb on + strand, within EFB2_00898at 926.685 kb on + strand, within EFB2_00898at 926.689 kb on - strand, within EFB2_00898at 926.689 kb on - strand, within EFB2_00898at 926.777 kb on + strand, within EFB2_00898at 926.778 kb on - strandat 926.779 kb on + strandat 926.898 kb on + strandat 926.904 kb on + strandat 926.911 kb on + strandat 926.924 kb on - strandat 926.928 kb on - strandat 926.968 kb on + strandat 926.976 kb on + strandat 926.979 kb on + strandat 926.980 kb on - strandat 926.980 kb on - strandat 926.983 kb on - strandat 927.017 kb on + strandat 927.054 kb on + strandat 927.086 kb on + strandat 927.088 kb on + strandat 927.094 kb on - strandat 927.125 kb on + strandat 927.161 kb on - strandat 927.161 kb on - strandat 927.161 kb on - strandat 927.203 kb on - strandat 927.213 kb on + strandat 927.219 kb on - strandat 927.228 kb on - strandat 927.260 kb on - strand, within EFB2_00899at 927.342 kb on + strand, within EFB2_00899at 927.343 kb on - strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.348 kb on + strand, within EFB2_00899at 927.403 kb on + strand, within EFB2_00899at 927.596 kb on + strandat 927.740 kb on + strandat 927.740 kb on + strandat 927.773 kb on + strandat 927.773 kb on + strandat 927.835 kb on + strandat 927.835 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
remove
924,969 + EFB2_00897 0.63 +0.3
924,970 - EFB2_00897 0.63 +0.7
925,023 - EFB2_00897 0.65 -3.5
925,032 + EFB2_00897 0.66 -0.5
925,039 + EFB2_00897 0.66 -1.4
925,045 + EFB2_00897 0.66 -0.2
925,045 + EFB2_00897 0.66 -0.4
925,139 - EFB2_00897 0.70 -0.0
925,143 + EFB2_00897 0.71 -0.3
925,168 + EFB2_00897 0.72 +0.7
925,216 - EFB2_00897 0.74 +0.2
925,258 + EFB2_00897 0.76 -1.9
925,288 + EFB2_00897 0.77 -0.8
925,361 + EFB2_00897 0.80 +0.7
925,362 - EFB2_00897 0.80 +0.6
925,362 - EFB2_00897 0.80 +1.5
925,381 - EFB2_00897 0.81 +0.1
925,460 - EFB2_00897 0.85 -1.5
925,469 - EFB2_00897 0.85 +0.4
925,527 + EFB2_00897 0.88 -1.2
925,660 + +0.7
925,660 + +0.3
925,661 - +0.9
925,661 - +0.4
925,756 + +1.3
925,865 + -1.8
925,908 + -0.4
925,933 - -0.3
925,935 - +2.1
925,944 - +1.1
925,958 + +0.8
925,980 - -0.4
926,039 - EFB2_00898 0.13 -1.4
926,040 + EFB2_00898 0.13 +0.7
926,043 + EFB2_00898 0.14 -0.0
926,044 - EFB2_00898 0.14 -0.1
926,095 + EFB2_00898 0.19 -2.2
926,095 + EFB2_00898 0.19 -1.1
926,095 + EFB2_00898 0.19 +0.2
926,095 + EFB2_00898 0.19 +1.7
926,096 - EFB2_00898 0.19 -0.8
926,096 - EFB2_00898 0.19 +0.8
926,097 + EFB2_00898 0.19 -0.9
926,097 + EFB2_00898 0.19 -0.4
926,097 + EFB2_00898 0.19 +1.0
926,097 + EFB2_00898 0.19 +0.3
926,101 + EFB2_00898 0.20 +0.3
926,184 + EFB2_00898 0.28 -0.4
926,185 - EFB2_00898 0.28 +0.4
926,199 - EFB2_00898 0.30 -0.7
926,243 - EFB2_00898 0.34 +2.0
926,258 + EFB2_00898 0.36 +0.3
926,258 + EFB2_00898 0.36 +0.7
926,263 + EFB2_00898 0.36 +1.6
926,268 + EFB2_00898 0.37 -1.8
926,269 - EFB2_00898 0.37 -0.9
926,286 + EFB2_00898 0.39 -0.2
926,326 + EFB2_00898 0.43 +4.3
926,328 + EFB2_00898 0.43 +0.3
926,346 - EFB2_00898 0.45 +1.0
926,352 - EFB2_00898 0.46 +0.3
926,352 - EFB2_00898 0.46 -0.6
926,354 - EFB2_00898 0.46 -2.3
926,354 - EFB2_00898 0.46 -0.7
926,355 + EFB2_00898 0.46 +1.5
926,355 + EFB2_00898 0.46 +0.6
926,356 - EFB2_00898 0.46 +1.3
926,356 - EFB2_00898 0.46 +0.1
926,420 - EFB2_00898 0.53 -0.2
926,503 - EFB2_00898 0.61 -1.1
926,534 - EFB2_00898 0.65 +0.1
926,570 - EFB2_00898 0.68 -0.3
926,610 + EFB2_00898 0.72 +0.3
926,610 + EFB2_00898 0.72 -2.8
926,639 + EFB2_00898 0.75 +0.3
926,644 + EFB2_00898 0.76 -1.3
926,645 - EFB2_00898 0.76 +0.4
926,645 - EFB2_00898 0.76 +0.8
926,645 - EFB2_00898 0.76 -0.2
926,657 - EFB2_00898 0.77 +3.7
926,657 - EFB2_00898 0.77 +0.7
926,659 - EFB2_00898 0.78 -1.7
926,685 + EFB2_00898 0.80 +4.7
926,685 + EFB2_00898 0.80 -1.1
926,689 - EFB2_00898 0.81 +0.7
926,689 - EFB2_00898 0.81 -0.1
926,777 + EFB2_00898 0.90 -0.3
926,778 - +0.5
926,779 + -1.5
926,898 + -1.2
926,904 + +0.5
926,911 + -1.9
926,924 - -2.3
926,928 - -1.6
926,968 + +1.2
926,976 + -0.9
926,979 + -0.6
926,980 - +0.5
926,980 - -1.7
926,983 - -0.2
927,017 + -0.5
927,054 + -0.6
927,086 + -3.6
927,088 + +1.3
927,094 - -0.6
927,125 + +1.4
927,161 - -1.7
927,161 - -0.4
927,161 - +0.1
927,203 - +0.1
927,213 + -0.5
927,219 - +1.1
927,228 - -1.6
927,260 - EFB2_00899 0.17 -0.5
927,342 + EFB2_00899 0.36 -1.0
927,343 - EFB2_00899 0.36 -1.3
927,346 + EFB2_00899 0.37 -0.7
927,346 + EFB2_00899 0.37 -1.1
927,346 + EFB2_00899 0.37 +0.2
927,346 + EFB2_00899 0.37 -0.8
927,348 + EFB2_00899 0.37 -0.7
927,403 + EFB2_00899 0.50 -0.7
927,596 + +0.4
927,740 + +2.5
927,740 + -1.4
927,773 + +0.6
927,773 + -1.2
927,835 + -0.0
927,835 + -0.5

Or see this region's nucleotide sequence