Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS17750

Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwaaA and COO64_RS17750 are separated by 77 nucleotidesCOO64_RS17750 and thiC are separated by 403 nucleotides COO64_RS17745: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 67,054 to 68,322 waaA COO64_RS17750: COO64_RS17750 - TolC family outer membrane protein, at 68,400 to 69,833 _RS17750 COO64_RS17755: thiC - phosphomethylpyrimidine synthase ThiC, at 70,237 to 72,123 thiC Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 68.320 kb on + strandat 68.473 kb on + strandat 68.473 kb on + strandat 68.473 kb on + strandat 68.474 kb on - strandat 68.488 kb on + strandat 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.563 kb on + strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.564 kb on - strand, within COO64_RS17750at 68.569 kb on + strand, within COO64_RS17750at 68.577 kb on - strand, within COO64_RS17750at 68.577 kb on - strand, within COO64_RS17750at 68.577 kb on - strand, within COO64_RS17750at 68.584 kb on + strand, within COO64_RS17750at 68.584 kb on + strand, within COO64_RS17750at 68.584 kb on + strand, within COO64_RS17750at 68.585 kb on - strand, within COO64_RS17750at 68.602 kb on + strand, within COO64_RS17750at 68.602 kb on + strand, within COO64_RS17750at 68.602 kb on + strand, within COO64_RS17750at 68.602 kb on + strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.603 kb on - strand, within COO64_RS17750at 68.824 kb on + strand, within COO64_RS17750at 68.824 kb on + strand, within COO64_RS17750at 68.825 kb on - strand, within COO64_RS17750at 68.825 kb on - strand, within COO64_RS17750at 68.917 kb on + strand, within COO64_RS17750at 68.917 kb on + strand, within COO64_RS17750at 68.917 kb on + strand, within COO64_RS17750at 68.918 kb on - strand, within COO64_RS17750at 68.918 kb on - strand, within COO64_RS17750at 68.918 kb on - strand, within COO64_RS17750at 68.918 kb on - strand, within COO64_RS17750at 69.055 kb on + strand, within COO64_RS17750at 69.055 kb on + strand, within COO64_RS17750at 69.055 kb on + strand, within COO64_RS17750at 69.056 kb on - strand, within COO64_RS17750at 69.056 kb on - strand, within COO64_RS17750at 69.056 kb on - strand, within COO64_RS17750at 69.056 kb on - strand, within COO64_RS17750at 69.135 kb on + strand, within COO64_RS17750at 69.136 kb on - strand, within COO64_RS17750at 69.136 kb on - strand, within COO64_RS17750at 69.136 kb on - strand, within COO64_RS17750at 69.172 kb on + strand, within COO64_RS17750at 69.172 kb on + strand, within COO64_RS17750at 69.172 kb on + strand, within COO64_RS17750at 69.172 kb on + strand, within COO64_RS17750at 69.172 kb on + strand, within COO64_RS17750at 69.259 kb on + strand, within COO64_RS17750at 69.259 kb on + strand, within COO64_RS17750at 69.259 kb on + strand, within COO64_RS17750at 69.260 kb on - strand, within COO64_RS17750at 69.403 kb on + strand, within COO64_RS17750at 69.404 kb on - strand, within COO64_RS17750at 69.518 kb on + strand, within COO64_RS17750at 69.518 kb on + strand, within COO64_RS17750at 69.518 kb on + strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.519 kb on - strand, within COO64_RS17750at 69.676 kb on + strand, within COO64_RS17750at 69.677 kb on - strand, within COO64_RS17750at 69.708 kb on - strandat 69.727 kb on + strandat 69.727 kb on + strandat 69.727 kb on + strandat 69.728 kb on - strandat 69.791 kb on + strandat 69.791 kb on + strandat 69.792 kb on - strandat 69.833 kb on + strandat 69.834 kb on - strandat 69.876 kb on + strandat 69.876 kb on + strandat 69.877 kb on - strandat 69.877 kb on - strandat 69.877 kb on - strandat 69.877 kb on - strandat 69.877 kb on - strandat 69.906 kb on + strandat 69.907 kb on - strandat 69.907 kb on - strandat 69.919 kb on + strandat 69.920 kb on - strandat 69.920 kb on - strandat 69.920 kb on - strandat 69.920 kb on - strandat 69.920 kb on - strandat 69.965 kb on + strandat 69.965 kb on + strandat 69.966 kb on - strandat 70.155 kb on + strandat 70.155 kb on + strandat 70.156 kb on - strandat 70.156 kb on - strandat 70.212 kb on + strandat 70.212 kb on + strandat 70.212 kb on + strandat 70.213 kb on - strandat 70.213 kb on - strandat 70.213 kb on - strandat 70.242 kb on + strandat 70.243 kb on - strandat 70.243 kb on - strandat 70.243 kb on - strandat 70.257 kb on + strandat 70.258 kb on - strandat 70.258 kb on - strandat 70.258 kb on - strandat 70.298 kb on + strandat 70.299 kb on - strandat 70.327 kb on + strandat 70.327 kb on + strandat 70.432 kb on + strand, within thiCat 70.432 kb on + strand, within thiCat 70.433 kb on - strand, within thiCat 70.433 kb on - strand, within thiCat 70.450 kb on + strand, within thiCat 70.666 kb on + strand, within thiCat 70.667 kb on - strand, within thiCat 70.667 kb on - strand, within thiCat 70.702 kb on + strand, within thiCat 70.702 kb on + strand, within thiCat 70.703 kb on - strand, within thiC

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X
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68,320 + +0.4
68,473 + -1.5
68,473 + +0.7
68,473 + -0.3
68,474 - -0.0
68,488 + -1.2
68,563 + COO64_RS17750 0.11 +0.8
68,563 + COO64_RS17750 0.11 -0.7
68,563 + COO64_RS17750 0.11 -0.7
68,563 + COO64_RS17750 0.11 +0.7
68,563 + COO64_RS17750 0.11 -1.2
68,563 + COO64_RS17750 0.11 +0.2
68,563 + COO64_RS17750 0.11 +0.8
68,563 + COO64_RS17750 0.11 +0.9
68,563 + COO64_RS17750 0.11 -0.3
68,564 - COO64_RS17750 0.11 +0.7
68,564 - COO64_RS17750 0.11 -0.0
68,564 - COO64_RS17750 0.11 -0.0
68,564 - COO64_RS17750 0.11 -0.4
68,564 - COO64_RS17750 0.11 +0.1
68,564 - COO64_RS17750 0.11 +0.8
68,564 - COO64_RS17750 0.11 -0.7
68,564 - COO64_RS17750 0.11 -0.6
68,564 - COO64_RS17750 0.11 -1.1
68,569 + COO64_RS17750 0.12 +0.4
68,577 - COO64_RS17750 0.12 +1.0
68,577 - COO64_RS17750 0.12 -0.3
68,577 - COO64_RS17750 0.12 -0.1
68,584 + COO64_RS17750 0.13 +0.7
68,584 + COO64_RS17750 0.13 -2.0
68,584 + COO64_RS17750 0.13 -0.0
68,585 - COO64_RS17750 0.13 -1.1
68,602 + COO64_RS17750 0.14 -0.6
68,602 + COO64_RS17750 0.14 -1.0
68,602 + COO64_RS17750 0.14 -0.0
68,602 + COO64_RS17750 0.14 -1.0
68,603 - COO64_RS17750 0.14 -0.1
68,603 - COO64_RS17750 0.14 -0.6
68,603 - COO64_RS17750 0.14 +0.7
68,603 - COO64_RS17750 0.14 -0.6
68,603 - COO64_RS17750 0.14 +0.1
68,603 - COO64_RS17750 0.14 -0.1
68,603 - COO64_RS17750 0.14 -1.1
68,824 + COO64_RS17750 0.30 -0.7
68,824 + COO64_RS17750 0.30 -2.3
68,825 - COO64_RS17750 0.30 -1.0
68,825 - COO64_RS17750 0.30 -1.3
68,917 + COO64_RS17750 0.36 -0.6
68,917 + COO64_RS17750 0.36 -0.2
68,917 + COO64_RS17750 0.36 -0.3
68,918 - COO64_RS17750 0.36 -0.3
68,918 - COO64_RS17750 0.36 +0.3
68,918 - COO64_RS17750 0.36 +0.2
68,918 - COO64_RS17750 0.36 -1.1
69,055 + COO64_RS17750 0.46 +0.3
69,055 + COO64_RS17750 0.46 +0.1
69,055 + COO64_RS17750 0.46 +0.8
69,056 - COO64_RS17750 0.46 -0.8
69,056 - COO64_RS17750 0.46 +0.2
69,056 - COO64_RS17750 0.46 -0.6
69,056 - COO64_RS17750 0.46 +0.9
69,135 + COO64_RS17750 0.51 -0.0
69,136 - COO64_RS17750 0.51 +0.3
69,136 - COO64_RS17750 0.51 -0.2
69,136 - COO64_RS17750 0.51 +0.2
69,172 + COO64_RS17750 0.54 +0.0
69,172 + COO64_RS17750 0.54 +0.2
69,172 + COO64_RS17750 0.54 +0.2
69,172 + COO64_RS17750 0.54 +0.1
69,172 + COO64_RS17750 0.54 -0.5
69,259 + COO64_RS17750 0.60 -0.2
69,259 + COO64_RS17750 0.60 -0.2
69,259 + COO64_RS17750 0.60 +0.2
69,260 - COO64_RS17750 0.60 +1.2
69,403 + COO64_RS17750 0.70 +0.4
69,404 - COO64_RS17750 0.70 -0.5
69,518 + COO64_RS17750 0.78 +0.5
69,518 + COO64_RS17750 0.78 +0.2
69,518 + COO64_RS17750 0.78 -0.1
69,519 - COO64_RS17750 0.78 -0.7
69,519 - COO64_RS17750 0.78 +0.8
69,519 - COO64_RS17750 0.78 -0.4
69,519 - COO64_RS17750 0.78 +1.0
69,519 - COO64_RS17750 0.78 +0.2
69,519 - COO64_RS17750 0.78 -0.0
69,519 - COO64_RS17750 0.78 -1.0
69,676 + COO64_RS17750 0.89 -0.4
69,677 - COO64_RS17750 0.89 -0.7
69,708 - -1.2
69,727 + +0.8
69,727 + +0.7
69,727 + -0.3
69,728 - +0.4
69,791 + -2.7
69,791 + -1.0
69,792 - -0.3
69,833 + -0.6
69,834 - -0.7
69,876 + -0.4
69,876 + +0.6
69,877 - -0.6
69,877 - +0.2
69,877 - -1.5
69,877 - -0.1
69,877 - -0.3
69,906 + +1.2
69,907 - +1.2
69,907 - -0.3
69,919 + +0.4
69,920 - -0.1
69,920 - +0.4
69,920 - +0.7
69,920 - -0.2
69,920 - +1.1
69,965 + -0.9
69,965 + +0.3
69,966 - +0.2
70,155 + +0.2
70,155 + -0.3
70,156 - -0.5
70,156 - +0.3
70,212 + +0.4
70,212 + +1.3
70,212 + -0.7
70,213 - -0.2
70,213 - +1.5
70,213 - -0.0
70,242 + +0.8
70,243 - +0.1
70,243 - +0.3
70,243 - -0.3
70,257 + -0.3
70,258 - -0.3
70,258 - -0.1
70,258 - +0.4
70,298 + +0.4
70,299 - +0.8
70,327 + -0.2
70,327 + +0.5
70,432 + thiC COO64_RS17755 0.10 -0.4
70,432 + thiC COO64_RS17755 0.10 -1.3
70,433 - thiC COO64_RS17755 0.10 -1.0
70,433 - thiC COO64_RS17755 0.10 -0.1
70,450 + thiC COO64_RS17755 0.11 -0.0
70,666 + thiC COO64_RS17755 0.23 +0.2
70,667 - thiC COO64_RS17755 0.23 -0.6
70,667 - thiC COO64_RS17755 0.23 -0.3
70,702 + thiC COO64_RS17755 0.25 +0.2
70,702 + thiC COO64_RS17755 0.25 +1.4
70,703 - thiC COO64_RS17755 0.25 -0.3

Or see this region's nucleotide sequence