Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05306 and BACOVA_05307 are separated by 75 nucleotides BACOVA_05307 and BACOVA_05308 are separated by 120 nucleotides BACOVA_05308 and BACOVA_05309 are separated by 115 nucleotides
BACOVA_05306: BACOVA_05306 - pseudouridine synthase, RluA family, at 795,228 to 796,922
_05306
BACOVA_05307: BACOVA_05307 - hypothetical protein, at 796,998 to 797,525
_05307
BACOVA_05308: BACOVA_05308 - MaoC-like protein, at 797,646 to 798,110
_05308
BACOVA_05309: BACOVA_05309 - linear amide C-N hydrolase, choloylglycine hydrolase family protein, at 798,226 to 799,170
_05309
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.712 kb on + strand, within BACOVA_05306 at 796.713 kb on - strand, within BACOVA_05306 at 796.725 kb on - strand, within BACOVA_05306 at 796.770 kb on + strand at 796.770 kb on + strand at 796.850 kb on + strand at 796.851 kb on - strand at 796.917 kb on + strand at 796.918 kb on - strand at 796.918 kb on - strand at 796.929 kb on - strand at 796.930 kb on + strand at 796.931 kb on - strand at 796.932 kb on + strand at 796.932 kb on + strand at 796.933 kb on - strand at 796.934 kb on + strand at 796.935 kb on - strand at 796.935 kb on - strand at 796.950 kb on + strand at 796.951 kb on - strand at 796.982 kb on + strand at 796.983 kb on - strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.003 kb on + strand at 797.100 kb on + strand, within BACOVA_05307 at 797.128 kb on - strand, within BACOVA_05307 at 797.192 kb on + strand, within BACOVA_05307 at 797.217 kb on - strand, within BACOVA_05307 at 797.277 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.307 kb on + strand, within BACOVA_05307 at 797.308 kb on - strand, within BACOVA_05307 at 797.316 kb on + strand, within BACOVA_05307 at 797.317 kb on - strand, within BACOVA_05307 at 797.403 kb on - strand, within BACOVA_05307 at 797.482 kb on - strand at 797.534 kb on + strand at 797.535 kb on - strand at 797.538 kb on + strand at 797.538 kb on + strand at 797.556 kb on + strand at 797.576 kb on + strand at 797.577 kb on - strand at 797.617 kb on - strand at 797.617 kb on - strand at 797.620 kb on + strand at 797.621 kb on - strand at 797.692 kb on + strand at 797.692 kb on + strand at 797.704 kb on + strand, within BACOVA_05308 at 797.742 kb on - strand, within BACOVA_05308 at 797.788 kb on + strand, within BACOVA_05308 at 797.789 kb on - strand, within BACOVA_05308 at 797.809 kb on + strand, within BACOVA_05308 at 797.810 kb on - strand, within BACOVA_05308 at 797.813 kb on + strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.869 kb on - strand, within BACOVA_05308 at 797.894 kb on - strand, within BACOVA_05308 at 797.897 kb on + strand, within BACOVA_05308 at 797.898 kb on - strand, within BACOVA_05308 at 797.919 kb on + strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.954 kb on - strand, within BACOVA_05308 at 797.984 kb on + strand, within BACOVA_05308 at 798.088 kb on + strand at 798.089 kb on - strand at 798.096 kb on + strand at 798.159 kb on - strand at 798.313 kb on - strand at 798.316 kb on + strand at 798.316 kb on + strand at 798.317 kb on - strand at 798.375 kb on + strand, within BACOVA_05309 at 798.375 kb on + strand, within BACOVA_05309 at 798.379 kb on - strand, within BACOVA_05309 at 798.405 kb on - strand, within BACOVA_05309 at 798.482 kb on + strand, within BACOVA_05309 at 798.496 kb on - strand, within BACOVA_05309 at 798.514 kb on + strand, within BACOVA_05309 at 798.529 kb on + strand, within BACOVA_05309 at 798.529 kb on + strand, within BACOVA_05309 at 798.542 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.735 kb on + strand, within BACOVA_05309 at 798.736 kb on - strand, within BACOVA_05309 at 798.736 kb on - strand, within BACOVA_05309 at 798.737 kb on + strand, within BACOVA_05309 at 798.826 kb on + strand, within BACOVA_05309 at 798.891 kb on + strand, within BACOVA_05309 at 798.892 kb on - strand, within BACOVA_05309 at 798.892 kb on - strand, within BACOVA_05309 at 798.893 kb on + strand, within BACOVA_05309 at 798.894 kb on - strand, within BACOVA_05309 at 798.894 kb on - strand, within BACOVA_05309 at 798.968 kb on - strand, within BACOVA_05309 at 799.046 kb on + strand, within BACOVA_05309
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) remove 796,712 + BACOVA_05306 0.88 +1.4 796,713 - BACOVA_05306 0.88 +0.4 796,725 - BACOVA_05306 0.88 -1.0 796,770 + +1.2 796,770 + +0.6 796,850 + +0.8 796,851 - -0.9 796,917 + +0.5 796,918 - -0.9 796,918 - -0.2 796,929 - +0.1 796,930 + -1.9 796,931 - -0.3 796,932 + +0.9 796,932 + -0.4 796,933 - -1.2 796,934 + -0.0 796,935 - +1.1 796,935 - -2.0 796,950 + -0.7 796,951 - -1.1 796,982 + -0.1 796,983 - +0.4 797,003 + +0.8 797,003 + +1.1 797,003 + -0.9 797,003 + -0.8 797,100 + BACOVA_05307 0.19 -0.1 797,128 - BACOVA_05307 0.25 -0.7 797,192 + BACOVA_05307 0.37 -3.5 797,217 - BACOVA_05307 0.41 -0.7 797,277 + BACOVA_05307 0.53 -0.7 797,300 + BACOVA_05307 0.57 -0.9 797,300 + BACOVA_05307 0.57 -1.2 797,307 + BACOVA_05307 0.59 -1.6 797,308 - BACOVA_05307 0.59 -0.9 797,316 + BACOVA_05307 0.60 +1.1 797,317 - BACOVA_05307 0.60 +2.4 797,403 - BACOVA_05307 0.77 -0.6 797,482 - +1.9 797,534 + -0.1 797,535 - -0.8 797,538 + +0.2 797,538 + -0.2 797,556 + -0.8 797,576 + +0.1 797,577 - +2.1 797,617 - -0.0 797,617 - -0.9 797,620 + +0.1 797,621 - +1.0 797,692 + -0.7 797,692 + -1.1 797,704 + BACOVA_05308 0.12 -2.5 797,742 - BACOVA_05308 0.21 +0.8 797,788 + BACOVA_05308 0.31 -0.2 797,789 - BACOVA_05308 0.31 -0.7 797,809 + BACOVA_05308 0.35 -0.3 797,810 - BACOVA_05308 0.35 -1.6 797,813 + BACOVA_05308 0.36 -1.8 797,826 - BACOVA_05308 0.39 +1.4 797,826 - BACOVA_05308 0.39 -0.4 797,869 - BACOVA_05308 0.48 -0.3 797,894 - BACOVA_05308 0.53 -1.0 797,897 + BACOVA_05308 0.54 -1.4 797,898 - BACOVA_05308 0.54 -0.2 797,919 + BACOVA_05308 0.59 +0.0 797,920 - BACOVA_05308 0.59 -1.0 797,920 - BACOVA_05308 0.59 -0.5 797,954 - BACOVA_05308 0.66 +0.5 797,984 + BACOVA_05308 0.73 -0.0 798,088 + +0.6 798,089 - -0.4 798,096 + -1.1 798,159 - -1.0 798,313 - -0.7 798,316 + -0.2 798,316 + -1.1 798,317 - +1.8 798,375 + BACOVA_05309 0.16 +0.4 798,375 + BACOVA_05309 0.16 -0.3 798,379 - BACOVA_05309 0.16 +0.1 798,405 - BACOVA_05309 0.19 -0.4 798,482 + BACOVA_05309 0.27 -3.0 798,496 - BACOVA_05309 0.29 +1.8 798,514 + BACOVA_05309 0.30 -0.4 798,529 + BACOVA_05309 0.32 -0.2 798,529 + BACOVA_05309 0.32 +1.9 798,542 + BACOVA_05309 0.33 +0.6 798,671 + BACOVA_05309 0.47 -0.6 798,671 + BACOVA_05309 0.47 -0.8 798,671 + BACOVA_05309 0.47 +1.0 798,671 + BACOVA_05309 0.47 +0.1 798,735 + BACOVA_05309 0.54 -1.2 798,736 - BACOVA_05309 0.54 -0.1 798,736 - BACOVA_05309 0.54 -1.5 798,737 + BACOVA_05309 0.54 +0.5 798,826 + BACOVA_05309 0.63 -0.5 798,891 + BACOVA_05309 0.70 +0.2 798,892 - BACOVA_05309 0.70 +0.4 798,892 - BACOVA_05309 0.70 +0.1 798,893 + BACOVA_05309 0.71 -0.9 798,894 - BACOVA_05309 0.71 -0.9 798,894 - BACOVA_05309 0.71 -0.0 798,968 - BACOVA_05309 0.79 +1.7 799,046 + BACOVA_05309 0.87 +0.4
Or see this region's nucleotide sequence