Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05151

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05150 and BACOVA_05151 are separated by 67 nucleotidesBACOVA_05151 and BACOVA_05152 are separated by 34 nucleotidesBACOVA_05152 and BACOVA_05153 are separated by 116 nucleotides BACOVA_05150: BACOVA_05150 - sigma factor regulatory protein, FecR/PupR family, at 631,080 to 632,240 _05150 BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862 _05151 BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598 _05152 BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904 _05153 Position (kb) 632 633Strain fitness (log2 ratio) -2 -1 0 1at 631.339 kb on - strand, within BACOVA_05150at 631.358 kb on + strand, within BACOVA_05150at 631.370 kb on + strand, within BACOVA_05150at 631.371 kb on - strand, within BACOVA_05150at 631.375 kb on + strand, within BACOVA_05150at 631.375 kb on + strand, within BACOVA_05150at 631.376 kb on - strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.431 kb on + strand, within BACOVA_05150at 631.446 kb on + strand, within BACOVA_05150at 631.447 kb on - strand, within BACOVA_05150at 631.463 kb on + strand, within BACOVA_05150at 631.485 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.521 kb on - strand, within BACOVA_05150at 631.521 kb on - strand, within BACOVA_05150at 631.710 kb on + strand, within BACOVA_05150at 631.773 kb on - strand, within BACOVA_05150at 631.815 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.925 kb on - strand, within BACOVA_05150at 631.936 kb on - strand, within BACOVA_05150at 631.941 kb on + strand, within BACOVA_05150at 631.948 kb on - strand, within BACOVA_05150at 631.948 kb on - strand, within BACOVA_05150at 631.964 kb on - strand, within BACOVA_05150at 631.964 kb on - strand, within BACOVA_05150at 632.024 kb on - strand, within BACOVA_05150at 632.065 kb on - strand, within BACOVA_05150at 632.084 kb on - strand, within BACOVA_05150at 632.097 kb on + strand, within BACOVA_05150at 632.113 kb on - strand, within BACOVA_05150at 632.152 kb on + strandat 632.317 kb on + strandat 632.459 kb on + strand, within BACOVA_05151at 632.460 kb on - strand, within BACOVA_05151at 632.462 kb on - strand, within BACOVA_05151at 632.557 kb on - strand, within BACOVA_05151at 632.583 kb on - strand, within BACOVA_05151at 632.608 kb on + strand, within BACOVA_05151at 632.643 kb on - strand, within BACOVA_05151at 632.707 kb on + strand, within BACOVA_05151at 632.750 kb on + strand, within BACOVA_05151at 632.776 kb on - strand, within BACOVA_05151at 632.776 kb on - strand, within BACOVA_05151at 632.780 kb on + strand, within BACOVA_05151at 632.780 kb on + strand, within BACOVA_05151at 632.781 kb on - strand, within BACOVA_05151at 632.783 kb on + strand, within BACOVA_05151at 632.784 kb on - strand, within BACOVA_05151at 632.784 kb on - strand, within BACOVA_05151at 632.794 kb on + strand, within BACOVA_05151at 632.795 kb on - strand, within BACOVA_05151at 632.828 kb on - strandat 632.840 kb on - strandat 632.850 kb on + strandat 632.854 kb on + strandat 632.854 kb on + strandat 632.854 kb on + strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.867 kb on + strandat 632.898 kb on + strandat 633.226 kb on + strand, within BACOVA_05152at 633.260 kb on - strand, within BACOVA_05152at 633.483 kb on + strand, within BACOVA_05152at 633.492 kb on - strand, within BACOVA_05152at 633.542 kb on + strandat 633.619 kb on - strandat 633.667 kb on - strandat 633.738 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
remove
631,339 - BACOVA_05150 0.22 -2.6
631,358 + BACOVA_05150 0.24 -1.9
631,370 + BACOVA_05150 0.25 +1.1
631,371 - BACOVA_05150 0.25 -1.1
631,375 + BACOVA_05150 0.25 -2.2
631,375 + BACOVA_05150 0.25 +1.0
631,376 - BACOVA_05150 0.25 -0.6
631,379 + BACOVA_05150 0.26 +0.6
631,379 + BACOVA_05150 0.26 -0.8
631,379 + BACOVA_05150 0.26 +0.4
631,380 - BACOVA_05150 0.26 -1.3
631,380 - BACOVA_05150 0.26 +0.3
631,380 - BACOVA_05150 0.26 -0.6
631,431 + BACOVA_05150 0.30 +1.1
631,446 + BACOVA_05150 0.32 -1.6
631,447 - BACOVA_05150 0.32 +0.4
631,463 + BACOVA_05150 0.33 +0.1
631,485 + BACOVA_05150 0.35 +1.4
631,520 + BACOVA_05150 0.38 -1.3
631,520 + BACOVA_05150 0.38 +0.8
631,520 + BACOVA_05150 0.38 -1.6
631,521 - BACOVA_05150 0.38 -0.9
631,521 - BACOVA_05150 0.38 +0.2
631,710 + BACOVA_05150 0.54 -1.3
631,773 - BACOVA_05150 0.60 -0.7
631,815 - BACOVA_05150 0.63 -0.8
631,916 - BACOVA_05150 0.72 -1.1
631,916 - BACOVA_05150 0.72 -1.0
631,916 - BACOVA_05150 0.72 +0.4
631,925 - BACOVA_05150 0.73 -0.1
631,936 - BACOVA_05150 0.74 -0.6
631,941 + BACOVA_05150 0.74 +0.2
631,948 - BACOVA_05150 0.75 -0.1
631,948 - BACOVA_05150 0.75 -0.8
631,964 - BACOVA_05150 0.76 -0.1
631,964 - BACOVA_05150 0.76 -2.1
632,024 - BACOVA_05150 0.81 -2.3
632,065 - BACOVA_05150 0.85 -0.1
632,084 - BACOVA_05150 0.86 +1.6
632,097 + BACOVA_05150 0.88 +0.8
632,113 - BACOVA_05150 0.89 -1.1
632,152 + +0.6
632,317 + -0.2
632,459 + BACOVA_05151 0.27 -0.6
632,460 - BACOVA_05151 0.27 -0.9
632,462 - BACOVA_05151 0.28 -0.0
632,557 - BACOVA_05151 0.45 +0.2
632,583 - BACOVA_05151 0.50 -0.6
632,608 + BACOVA_05151 0.54 +1.3
632,643 - BACOVA_05151 0.60 +1.2
632,707 + BACOVA_05151 0.72 +0.9
632,750 + BACOVA_05151 0.80 -1.0
632,776 - BACOVA_05151 0.84 -0.3
632,776 - BACOVA_05151 0.84 -1.1
632,780 + BACOVA_05151 0.85 -2.0
632,780 + BACOVA_05151 0.85 -0.6
632,781 - BACOVA_05151 0.85 -0.0
632,783 + BACOVA_05151 0.86 +1.1
632,784 - BACOVA_05151 0.86 -2.5
632,784 - BACOVA_05151 0.86 -0.2
632,794 + BACOVA_05151 0.88 +0.2
632,795 - BACOVA_05151 0.88 +0.3
632,828 - -0.9
632,840 - +0.7
632,850 + +1.4
632,854 + +1.0
632,854 + -1.0
632,854 + -0.1
632,855 - -0.2
632,855 - -0.0
632,855 - +1.6
632,855 - +0.5
632,855 - +0.8
632,867 + +1.3
632,898 + +1.1
633,226 + BACOVA_05152 0.47 -1.0
633,260 - BACOVA_05152 0.52 +0.2
633,483 + BACOVA_05152 0.83 -0.4
633,492 - BACOVA_05152 0.85 -1.4
633,542 + -1.2
633,619 - -1.0
633,667 - -2.5
633,738 + -1.0

Or see this region's nucleotide sequence