Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05125

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05123 and BACOVA_05124 are separated by 120 nucleotidesBACOVA_05124 and BACOVA_05125 overlap by 1 nucleotidesBACOVA_05125 and BACOVA_05126 are separated by 389 nucleotides BACOVA_05123: BACOVA_05123 - tRNA dimethylallyltransferase, at 597,875 to 598,795 _05123 BACOVA_05124: BACOVA_05124 - hypothetical protein, at 598,916 to 599,020 _05124 BACOVA_05125: BACOVA_05125 - hypothetical protein, at 599,020 to 599,127 _05125 BACOVA_05126: BACOVA_05126 - TonB-dependent receptor plug domain protein, at 599,517 to 602,168 _05126 Position (kb) 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 598.065 kb on + strand, within BACOVA_05123at 598.065 kb on + strand, within BACOVA_05123at 598.078 kb on - strand, within BACOVA_05123at 598.096 kb on - strand, within BACOVA_05123at 598.099 kb on - strand, within BACOVA_05123at 598.284 kb on + strand, within BACOVA_05123at 598.284 kb on + strand, within BACOVA_05123at 598.284 kb on + strand, within BACOVA_05123at 598.285 kb on - strand, within BACOVA_05123at 598.287 kb on + strand, within BACOVA_05123at 598.288 kb on - strand, within BACOVA_05123at 598.288 kb on - strand, within BACOVA_05123at 598.288 kb on - strand, within BACOVA_05123at 598.311 kb on - strand, within BACOVA_05123at 598.311 kb on - strand, within BACOVA_05123at 598.360 kb on - strand, within BACOVA_05123at 598.367 kb on + strand, within BACOVA_05123at 598.368 kb on - strand, within BACOVA_05123at 598.450 kb on - strand, within BACOVA_05123at 598.474 kb on - strand, within BACOVA_05123at 598.477 kb on + strand, within BACOVA_05123at 598.478 kb on - strand, within BACOVA_05123at 598.478 kb on - strand, within BACOVA_05123at 598.478 kb on - strand, within BACOVA_05123at 598.493 kb on + strand, within BACOVA_05123at 598.569 kb on + strand, within BACOVA_05123at 598.615 kb on + strand, within BACOVA_05123at 598.616 kb on - strand, within BACOVA_05123at 598.630 kb on + strand, within BACOVA_05123at 598.632 kb on + strand, within BACOVA_05123at 598.633 kb on - strand, within BACOVA_05123at 598.672 kb on + strand, within BACOVA_05123at 598.675 kb on - strand, within BACOVA_05123at 598.676 kb on + strand, within BACOVA_05123at 598.676 kb on + strand, within BACOVA_05123at 598.676 kb on + strand, within BACOVA_05123at 598.759 kb on + strandat 598.770 kb on - strandat 598.785 kb on + strandat 598.795 kb on + strandat 598.796 kb on - strandat 598.848 kb on + strandat 598.873 kb on + strandat 598.874 kb on - strandat 598.874 kb on - strandat 598.894 kb on + strandat 598.907 kb on - strandat 598.913 kb on + strandat 598.935 kb on + strand, within BACOVA_05124at 598.972 kb on + strand, within BACOVA_05124at 598.972 kb on + strand, within BACOVA_05124at 598.973 kb on - strand, within BACOVA_05124at 598.976 kb on + strand, within BACOVA_05124at 598.981 kb on + strand, within BACOVA_05124at 598.984 kb on + strand, within BACOVA_05124at 598.985 kb on - strand, within BACOVA_05124at 599.085 kb on - strand, within BACOVA_05125at 599.125 kb on + strandat 599.134 kb on + strandat 599.191 kb on + strandat 599.200 kb on + strandat 599.202 kb on + strandat 599.221 kb on + strandat 599.224 kb on - strandat 599.266 kb on + strandat 599.278 kb on - strandat 599.283 kb on - strandat 599.305 kb on - strandat 599.309 kb on + strandat 599.343 kb on + strandat 599.355 kb on - strandat 599.360 kb on - strandat 599.400 kb on + strandat 599.408 kb on - strandat 599.413 kb on - strandat 599.421 kb on + strandat 599.421 kb on + strandat 599.421 kb on + strandat 599.421 kb on + strandat 599.421 kb on + strandat 599.422 kb on - strandat 599.422 kb on - strandat 599.424 kb on - strandat 599.424 kb on - strandat 599.424 kb on - strandat 599.435 kb on - strandat 599.460 kb on - strandat 599.471 kb on + strandat 599.471 kb on + strandat 599.479 kb on + strandat 599.480 kb on - strandat 599.518 kb on + strandat 599.518 kb on + strandat 599.539 kb on - strandat 599.541 kb on + strandat 599.550 kb on + strandat 599.565 kb on - strandat 599.578 kb on - strandat 599.583 kb on + strandat 599.583 kb on + strandat 599.584 kb on - strandat 599.584 kb on - strandat 599.584 kb on - strandat 599.722 kb on + strandat 599.722 kb on + strandat 599.726 kb on + strandat 599.768 kb on + strandat 599.769 kb on - strandat 599.769 kb on - strandat 599.826 kb on - strand, within BACOVA_05126at 599.828 kb on + strand, within BACOVA_05126at 599.859 kb on + strand, within BACOVA_05126at 599.860 kb on - strand, within BACOVA_05126at 599.903 kb on + strand, within BACOVA_05126at 599.947 kb on + strand, within BACOVA_05126at 599.947 kb on + strand, within BACOVA_05126at 599.948 kb on - strand, within BACOVA_05126at 599.997 kb on - strand, within BACOVA_05126at 600.000 kb on + strand, within BACOVA_05126at 600.000 kb on + strand, within BACOVA_05126at 600.000 kb on + strand, within BACOVA_05126at 600.001 kb on - strand, within BACOVA_05126at 600.023 kb on + strand, within BACOVA_05126at 600.100 kb on + strand, within BACOVA_05126at 600.100 kb on + strand, within BACOVA_05126at 600.100 kb on + strand, within BACOVA_05126at 600.111 kb on - strand, within BACOVA_05126

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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598,065 + BACOVA_05123 0.21 -0.1
598,065 + BACOVA_05123 0.21 -1.9
598,078 - BACOVA_05123 0.22 -1.0
598,096 - BACOVA_05123 0.24 -0.3
598,099 - BACOVA_05123 0.24 +0.0
598,284 + BACOVA_05123 0.44 -0.1
598,284 + BACOVA_05123 0.44 -0.1
598,284 + BACOVA_05123 0.44 -0.8
598,285 - BACOVA_05123 0.45 -1.0
598,287 + BACOVA_05123 0.45 -0.6
598,288 - BACOVA_05123 0.45 +2.0
598,288 - BACOVA_05123 0.45 -1.5
598,288 - BACOVA_05123 0.45 +0.5
598,311 - BACOVA_05123 0.47 -1.5
598,311 - BACOVA_05123 0.47 -2.1
598,360 - BACOVA_05123 0.53 -0.9
598,367 + BACOVA_05123 0.53 -0.6
598,368 - BACOVA_05123 0.54 -0.1
598,450 - BACOVA_05123 0.62 -1.3
598,474 - BACOVA_05123 0.65 -1.8
598,477 + BACOVA_05123 0.65 -3.7
598,478 - BACOVA_05123 0.65 +1.5
598,478 - BACOVA_05123 0.65 -0.6
598,478 - BACOVA_05123 0.65 +0.5
598,493 + BACOVA_05123 0.67 -0.4
598,569 + BACOVA_05123 0.75 -0.1
598,615 + BACOVA_05123 0.80 -1.7
598,616 - BACOVA_05123 0.80 -1.3
598,630 + BACOVA_05123 0.82 +1.2
598,632 + BACOVA_05123 0.82 -1.5
598,633 - BACOVA_05123 0.82 +1.4
598,672 + BACOVA_05123 0.87 -2.8
598,675 - BACOVA_05123 0.87 -0.8
598,676 + BACOVA_05123 0.87 -3.2
598,676 + BACOVA_05123 0.87 +0.2
598,676 + BACOVA_05123 0.87 -0.8
598,759 + -0.1
598,770 - +0.4
598,785 + -1.5
598,795 + -1.3
598,796 - -0.2
598,848 + +2.2
598,873 + +0.0
598,874 - -0.3
598,874 - -2.8
598,894 + +1.7
598,907 - +0.3
598,913 + -1.1
598,935 + BACOVA_05124 0.18 +0.5
598,972 + BACOVA_05124 0.53 +1.2
598,972 + BACOVA_05124 0.53 -0.1
598,973 - BACOVA_05124 0.54 +0.9
598,976 + BACOVA_05124 0.57 -1.4
598,981 + BACOVA_05124 0.62 +0.4
598,984 + BACOVA_05124 0.65 -0.8
598,985 - BACOVA_05124 0.66 -1.0
599,085 - BACOVA_05125 0.60 +1.1
599,125 + -2.3
599,134 + +0.6
599,191 + +2.0
599,200 + -1.5
599,202 + +0.5
599,221 + -0.8
599,224 - -0.2
599,266 + +0.7
599,278 - +0.1
599,283 - +0.6
599,305 - +1.2
599,309 + -0.3
599,343 + -1.1
599,355 - +0.4
599,360 - +1.7
599,400 + -0.4
599,408 - -0.7
599,413 - -0.2
599,421 + +0.1
599,421 + -0.2
599,421 + -0.3
599,421 + -0.3
599,421 + +0.4
599,422 - -0.4
599,422 - -3.0
599,424 - +0.8
599,424 - +1.3
599,424 - -1.2
599,435 - -1.4
599,460 - -0.9
599,471 + -0.2
599,471 + -0.8
599,479 + +0.3
599,480 - -1.3
599,518 + -0.0
599,518 + +0.6
599,539 - +0.2
599,541 + -0.6
599,550 + +0.5
599,565 - +0.7
599,578 - +1.4
599,583 + -2.5
599,583 + -0.8
599,584 - -0.3
599,584 - -0.5
599,584 - +0.3
599,722 + +0.3
599,722 + -1.5
599,726 + +1.0
599,768 + -0.2
599,769 - -1.3
599,769 - -0.4
599,826 - BACOVA_05126 0.12 +0.4
599,828 + BACOVA_05126 0.12 +0.4
599,859 + BACOVA_05126 0.13 +0.9
599,860 - BACOVA_05126 0.13 -0.5
599,903 + BACOVA_05126 0.15 +0.2
599,947 + BACOVA_05126 0.16 +0.3
599,947 + BACOVA_05126 0.16 +1.7
599,948 - BACOVA_05126 0.16 -0.2
599,997 - BACOVA_05126 0.18 +1.7
600,000 + BACOVA_05126 0.18 -0.8
600,000 + BACOVA_05126 0.18 -0.3
600,000 + BACOVA_05126 0.18 -1.7
600,001 - BACOVA_05126 0.18 -0.6
600,023 + BACOVA_05126 0.19 -2.1
600,100 + BACOVA_05126 0.22 +0.8
600,100 + BACOVA_05126 0.22 -0.4
600,100 + BACOVA_05126 0.22 -0.6
600,111 - BACOVA_05126 0.22 -1.3

Or see this region's nucleotide sequence