Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04605

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04604 and BACOVA_04605 are separated by 402 nucleotides BACOVA_04604: BACOVA_04604 - 2-isopropylmalate synthase, at 552,981 to 554,477 _04604 BACOVA_04605: BACOVA_04605 - hypothetical protein, at 554,880 to 555,062 _04605 Position (kb) 554 555 556Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 553.927 kb on - strand, within BACOVA_04604at 553.957 kb on + strand, within BACOVA_04604at 553.957 kb on + strand, within BACOVA_04604at 553.976 kb on + strand, within BACOVA_04604at 553.976 kb on + strand, within BACOVA_04604at 553.976 kb on + strand, within BACOVA_04604at 553.988 kb on + strand, within BACOVA_04604at 554.062 kb on + strand, within BACOVA_04604at 554.079 kb on + strand, within BACOVA_04604at 554.096 kb on - strand, within BACOVA_04604at 554.096 kb on - strand, within BACOVA_04604at 554.110 kb on - strand, within BACOVA_04604at 554.150 kb on + strand, within BACOVA_04604at 554.153 kb on - strand, within BACOVA_04604at 554.156 kb on + strand, within BACOVA_04604at 554.157 kb on - strand, within BACOVA_04604at 554.175 kb on - strand, within BACOVA_04604at 554.192 kb on + strand, within BACOVA_04604at 554.193 kb on - strand, within BACOVA_04604at 554.193 kb on - strand, within BACOVA_04604at 554.198 kb on + strand, within BACOVA_04604at 554.198 kb on + strand, within BACOVA_04604at 554.224 kb on - strand, within BACOVA_04604at 554.237 kb on + strand, within BACOVA_04604at 554.238 kb on - strand, within BACOVA_04604at 554.270 kb on + strand, within BACOVA_04604at 554.270 kb on + strand, within BACOVA_04604at 554.270 kb on + strand, within BACOVA_04604at 554.271 kb on - strand, within BACOVA_04604at 554.271 kb on - strand, within BACOVA_04604at 554.359 kb on - strandat 554.400 kb on + strandat 554.400 kb on + strandat 554.441 kb on + strandat 554.442 kb on - strandat 554.468 kb on + strandat 554.468 kb on + strandat 554.469 kb on - strandat 554.477 kb on + strandat 554.477 kb on + strandat 554.483 kb on + strandat 554.483 kb on + strandat 554.487 kb on + strandat 554.488 kb on - strandat 554.489 kb on + strandat 554.490 kb on - strandat 554.493 kb on - strandat 554.493 kb on - strandat 554.551 kb on - strandat 554.565 kb on - strandat 554.605 kb on - strandat 554.608 kb on - strandat 554.608 kb on - strandat 554.608 kb on - strandat 554.613 kb on - strandat 554.616 kb on - strandat 554.618 kb on + strandat 554.633 kb on + strandat 554.633 kb on + strandat 554.633 kb on + strandat 554.634 kb on - strandat 554.634 kb on - strandat 554.634 kb on - strandat 554.637 kb on + strandat 554.637 kb on + strandat 554.638 kb on - strandat 554.639 kb on + strandat 554.639 kb on + strandat 554.672 kb on - strandat 554.672 kb on - strandat 554.881 kb on + strandat 554.882 kb on - strandat 555.085 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
remove
553,927 - BACOVA_04604 0.63 -1.9
553,957 + BACOVA_04604 0.65 -3.6
553,957 + BACOVA_04604 0.65 -0.4
553,976 + BACOVA_04604 0.66 -5.1
553,976 + BACOVA_04604 0.66 -3.4
553,976 + BACOVA_04604 0.66 -4.6
553,988 + BACOVA_04604 0.67 -4.5
554,062 + BACOVA_04604 0.72 -4.3
554,079 + BACOVA_04604 0.73 -1.9
554,096 - BACOVA_04604 0.74 -1.6
554,096 - BACOVA_04604 0.74 -1.7
554,110 - BACOVA_04604 0.75 -0.9
554,150 + BACOVA_04604 0.78 -0.7
554,153 - BACOVA_04604 0.78 -0.2
554,156 + BACOVA_04604 0.78 -2.8
554,157 - BACOVA_04604 0.79 -2.4
554,175 - BACOVA_04604 0.80 -4.3
554,192 + BACOVA_04604 0.81 -3.5
554,193 - BACOVA_04604 0.81 -2.8
554,193 - BACOVA_04604 0.81 -2.7
554,198 + BACOVA_04604 0.81 -1.4
554,198 + BACOVA_04604 0.81 -2.4
554,224 - BACOVA_04604 0.83 -3.4
554,237 + BACOVA_04604 0.84 +0.3
554,238 - BACOVA_04604 0.84 -0.4
554,270 + BACOVA_04604 0.86 -2.1
554,270 + BACOVA_04604 0.86 -2.9
554,270 + BACOVA_04604 0.86 -2.3
554,271 - BACOVA_04604 0.86 -3.4
554,271 - BACOVA_04604 0.86 -3.3
554,359 - -4.8
554,400 + -3.8
554,400 + -1.0
554,441 + -1.4
554,442 - -2.9
554,468 + -3.6
554,468 + -1.8
554,469 - -2.4
554,477 + -3.3
554,477 + -4.0
554,483 + -2.2
554,483 + -3.7
554,487 + -4.3
554,488 - -3.6
554,489 + -3.1
554,490 - -0.2
554,493 - -1.9
554,493 - -1.2
554,551 - -1.2
554,565 - -3.4
554,605 - -0.0
554,608 - +1.4
554,608 - +0.6
554,608 - -0.4
554,613 - +0.1
554,616 - -1.3
554,618 + -1.6
554,633 + -1.2
554,633 + -3.6
554,633 + -2.0
554,634 - -0.4
554,634 - +1.0
554,634 - -2.8
554,637 + -0.4
554,637 + -1.9
554,638 - -1.4
554,639 + -2.5
554,639 + -2.9
554,672 - -0.8
554,672 - +0.5
554,881 + -0.4
554,882 - +0.7
555,085 - +0.7

Or see this region's nucleotide sequence