Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03900

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03898 and BACOVA_03899 overlap by 32 nucleotidesBACOVA_03899 and BACOVA_03900 are separated by 111 nucleotidesBACOVA_03900 and BACOVA_03901 are separated by 48 nucleotidesBACOVA_03901 and BACOVA_03902 are separated by 28 nucleotides BACOVA_03898: BACOVA_03898 - hypothetical protein, at 238,310 to 238,966 _03898 BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687 _03899 BACOVA_03900: BACOVA_03900 - hypothetical protein, at 239,799 to 240,374 _03900 BACOVA_03901: BACOVA_03901 - hypothetical protein, at 240,423 to 241,070 _03901 BACOVA_03902: BACOVA_03902 - hypothetical protein, at 241,099 to 241,563 _03902 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 238.822 kb on + strand, within BACOVA_03898at 238.830 kb on + strand, within BACOVA_03898at 238.831 kb on - strand, within BACOVA_03898at 238.835 kb on - strand, within BACOVA_03898at 238.911 kb on + strandat 238.920 kb on + strandat 238.921 kb on - strandat 238.948 kb on + strandat 238.949 kb on - strandat 238.952 kb on - strandat 238.954 kb on + strandat 238.954 kb on + strandat 239.009 kb on + strandat 239.041 kb on + strand, within BACOVA_03899at 239.041 kb on + strand, within BACOVA_03899at 239.185 kb on - strand, within BACOVA_03899at 239.226 kb on + strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.235 kb on - strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899at 239.251 kb on + strand, within BACOVA_03899at 239.267 kb on + strand, within BACOVA_03899at 239.268 kb on - strand, within BACOVA_03899at 239.268 kb on - strand, within BACOVA_03899at 239.279 kb on - strand, within BACOVA_03899at 239.314 kb on + strand, within BACOVA_03899at 239.319 kb on + strand, within BACOVA_03899at 239.370 kb on + strand, within BACOVA_03899at 239.371 kb on - strand, within BACOVA_03899at 239.383 kb on - strand, within BACOVA_03899at 239.413 kb on + strand, within BACOVA_03899at 239.445 kb on + strand, within BACOVA_03899at 239.455 kb on - strand, within BACOVA_03899at 239.537 kb on + strand, within BACOVA_03899at 239.562 kb on - strand, within BACOVA_03899at 239.598 kb on - strand, within BACOVA_03899at 239.658 kb on + strandat 239.660 kb on + strandat 239.663 kb on + strandat 239.663 kb on + strandat 239.665 kb on + strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.708 kb on + strandat 239.733 kb on + strandat 239.773 kb on - strandat 239.804 kb on + strandat 239.806 kb on + strandat 239.957 kb on + strand, within BACOVA_03900at 239.987 kb on + strand, within BACOVA_03900at 239.988 kb on - strand, within BACOVA_03900at 239.995 kb on + strand, within BACOVA_03900at 239.996 kb on - strand, within BACOVA_03900at 240.038 kb on + strand, within BACOVA_03900at 240.039 kb on - strand, within BACOVA_03900at 240.058 kb on + strand, within BACOVA_03900at 240.059 kb on - strand, within BACOVA_03900at 240.059 kb on - strand, within BACOVA_03900at 240.078 kb on - strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.141 kb on - strand, within BACOVA_03900at 240.150 kb on - strand, within BACOVA_03900at 240.208 kb on - strand, within BACOVA_03900at 240.224 kb on + strand, within BACOVA_03900at 240.224 kb on + strand, within BACOVA_03900at 240.280 kb on - strand, within BACOVA_03900at 240.311 kb on - strand, within BACOVA_03900at 240.346 kb on + strandat 240.350 kb on + strandat 240.350 kb on + strandat 240.351 kb on - strandat 240.351 kb on - strandat 240.373 kb on - strandat 240.455 kb on - strandat 240.537 kb on - strand, within BACOVA_03901at 240.539 kb on - strand, within BACOVA_03901at 240.542 kb on - strand, within BACOVA_03901at 240.546 kb on - strand, within BACOVA_03901at 240.574 kb on - strand, within BACOVA_03901at 240.574 kb on - strand, within BACOVA_03901at 240.606 kb on - strand, within BACOVA_03901at 240.685 kb on - strand, within BACOVA_03901at 240.702 kb on - strand, within BACOVA_03901at 240.825 kb on - strand, within BACOVA_03901at 240.876 kb on - strand, within BACOVA_03901at 240.970 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 241.079 kb on - strandat 241.164 kb on - strand, within BACOVA_03902at 241.164 kb on - strand, within BACOVA_03902at 241.164 kb on - strand, within BACOVA_03902at 241.212 kb on - strand, within BACOVA_03902at 241.291 kb on - strand, within BACOVA_03902at 241.293 kb on - strand, within BACOVA_03902at 241.293 kb on - strand, within BACOVA_03902at 241.318 kb on - strand, within BACOVA_03902

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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238,822 + BACOVA_03898 0.78 +0.8
238,830 + BACOVA_03898 0.79 +0.9
238,831 - BACOVA_03898 0.79 -0.7
238,835 - BACOVA_03898 0.80 -0.2
238,911 + -0.6
238,920 + -0.6
238,921 - +0.3
238,948 + -1.3
238,949 - +0.6
238,952 - +1.0
238,954 + -2.0
238,954 + -0.0
239,009 + -0.1
239,041 + BACOVA_03899 0.14 -0.0
239,041 + BACOVA_03899 0.14 -0.7
239,185 - BACOVA_03899 0.33 -0.9
239,226 + BACOVA_03899 0.39 +0.9
239,231 - BACOVA_03899 0.39 -0.2
239,231 - BACOVA_03899 0.39 +2.1
239,234 + BACOVA_03899 0.40 -0.2
239,234 + BACOVA_03899 0.40 +1.0
239,235 - BACOVA_03899 0.40 -2.7
239,237 + BACOVA_03899 0.40 +0.4
239,237 + BACOVA_03899 0.40 +2.2
239,251 + BACOVA_03899 0.42 +1.2
239,267 + BACOVA_03899 0.44 +0.6
239,268 - BACOVA_03899 0.44 -1.0
239,268 - BACOVA_03899 0.44 -0.1
239,279 - BACOVA_03899 0.46 +0.5
239,314 + BACOVA_03899 0.50 -0.9
239,319 + BACOVA_03899 0.51 -1.2
239,370 + BACOVA_03899 0.58 -0.3
239,371 - BACOVA_03899 0.58 +0.4
239,383 - BACOVA_03899 0.59 +1.1
239,413 + BACOVA_03899 0.63 +1.1
239,445 + BACOVA_03899 0.68 +0.4
239,455 - BACOVA_03899 0.69 +0.1
239,537 + BACOVA_03899 0.80 +0.1
239,562 - BACOVA_03899 0.83 +0.6
239,598 - BACOVA_03899 0.88 -0.2
239,658 + -2.0
239,660 + +1.3
239,663 + -0.1
239,663 + +0.7
239,665 + +0.1
239,666 - -0.1
239,666 - +1.0
239,666 - -0.7
239,708 + -1.7
239,733 + -1.0
239,773 - +0.8
239,804 + +0.0
239,806 + +0.3
239,957 + BACOVA_03900 0.27 +0.5
239,987 + BACOVA_03900 0.33 +1.1
239,988 - BACOVA_03900 0.33 -1.7
239,995 + BACOVA_03900 0.34 +0.2
239,996 - BACOVA_03900 0.34 +0.0
240,038 + BACOVA_03900 0.41 +0.2
240,039 - BACOVA_03900 0.42 +0.1
240,058 + BACOVA_03900 0.45 -0.0
240,059 - BACOVA_03900 0.45 -0.3
240,059 - BACOVA_03900 0.45 -1.3
240,078 - BACOVA_03900 0.48 -0.0
240,135 + BACOVA_03900 0.58 -0.6
240,135 + BACOVA_03900 0.58 -0.6
240,135 + BACOVA_03900 0.58 -1.0
240,141 - BACOVA_03900 0.59 -0.9
240,150 - BACOVA_03900 0.61 -1.8
240,208 - BACOVA_03900 0.71 -0.7
240,224 + BACOVA_03900 0.74 +0.2
240,224 + BACOVA_03900 0.74 -0.5
240,280 - BACOVA_03900 0.84 -1.2
240,311 - BACOVA_03900 0.89 -1.7
240,346 + +0.3
240,350 + -1.7
240,350 + +0.4
240,351 - +0.4
240,351 - -0.3
240,373 - +0.4
240,455 - -0.8
240,537 - BACOVA_03901 0.18 -1.8
240,539 - BACOVA_03901 0.18 -0.3
240,542 - BACOVA_03901 0.18 -0.7
240,546 - BACOVA_03901 0.19 +0.6
240,574 - BACOVA_03901 0.23 +0.7
240,574 - BACOVA_03901 0.23 -1.6
240,606 - BACOVA_03901 0.28 -0.7
240,685 - BACOVA_03901 0.40 -0.2
240,702 - BACOVA_03901 0.43 +1.6
240,825 - BACOVA_03901 0.62 +0.1
240,876 - BACOVA_03901 0.70 +0.4
240,970 - BACOVA_03901 0.84 +0.2
240,988 - BACOVA_03901 0.87 +0.4
240,988 - BACOVA_03901 0.87 +1.0
240,988 - BACOVA_03901 0.87 +0.3
241,079 - -0.1
241,164 - BACOVA_03902 0.14 +0.7
241,164 - BACOVA_03902 0.14 +1.4
241,164 - BACOVA_03902 0.14 -1.3
241,212 - BACOVA_03902 0.24 +1.9
241,291 - BACOVA_03902 0.41 +0.8
241,293 - BACOVA_03902 0.42 -0.8
241,293 - BACOVA_03902 0.42 +1.2
241,318 - BACOVA_03902 0.47 +0.3

Or see this region's nucleotide sequence