Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03146

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03142 and BACOVA_03143 overlap by 6 nucleotidesBACOVA_03143 and BACOVA_03144 overlap by 17 nucleotidesBACOVA_03144 and BACOVA_03145 are separated by 71 nucleotidesBACOVA_03145 and BACOVA_03146 overlap by 4 nucleotidesBACOVA_03146 and BACOVA_03147 are separated by 13 nucleotidesBACOVA_03147 and BACOVA_03148 overlap by 11 nucleotides BACOVA_03142: BACOVA_03142 - hypothetical protein, at 233,954 to 235,264 _03142 BACOVA_03143: BACOVA_03143 - putative toxin-antitoxin system, antitoxin component, at 235,259 to 235,636 _03143 BACOVA_03144: BACOVA_03144 - nucleotidyltransferase domain protein, at 235,620 to 235,913 _03144 BACOVA_03145: BACOVA_03145 - hypothetical protein, at 235,985 to 236,212 _03145 BACOVA_03146: BACOVA_03146 - hydrolase, P-loop family, at 236,209 to 236,622 _03146 BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460 _03147 BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893 _03148 Position (kb) 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 235.225 kb on + strandat 235.226 kb on - strandat 235.228 kb on + strandat 235.228 kb on + strandat 235.228 kb on + strandat 235.228 kb on + strandat 235.228 kb on + strandat 235.232 kb on + strandat 235.232 kb on + strandat 235.233 kb on - strandat 235.265 kb on + strandat 235.319 kb on + strand, within BACOVA_03143at 235.320 kb on - strand, within BACOVA_03143at 235.320 kb on - strand, within BACOVA_03143at 235.325 kb on + strand, within BACOVA_03143at 235.325 kb on + strand, within BACOVA_03143at 235.334 kb on - strand, within BACOVA_03143at 235.356 kb on + strand, within BACOVA_03143at 235.357 kb on - strand, within BACOVA_03143at 235.420 kb on + strand, within BACOVA_03143at 235.457 kb on - strand, within BACOVA_03143at 235.469 kb on + strand, within BACOVA_03143at 235.469 kb on + strand, within BACOVA_03143at 235.524 kb on - strand, within BACOVA_03143at 235.555 kb on + strand, within BACOVA_03143at 235.555 kb on + strand, within BACOVA_03143at 235.556 kb on - strand, within BACOVA_03143at 235.574 kb on - strand, within BACOVA_03143at 235.574 kb on - strand, within BACOVA_03143at 235.621 kb on + strandat 235.622 kb on - strandat 235.628 kb on - strandat 235.629 kb on + strandat 235.629 kb on + strandat 235.676 kb on + strand, within BACOVA_03144at 235.710 kb on + strand, within BACOVA_03144at 235.745 kb on + strand, within BACOVA_03144at 235.829 kb on + strand, within BACOVA_03144at 235.983 kb on + strandat 235.984 kb on - strandat 235.984 kb on - strandat 236.024 kb on + strand, within BACOVA_03145at 236.044 kb on + strand, within BACOVA_03145at 236.045 kb on - strand, within BACOVA_03145at 236.045 kb on - strand, within BACOVA_03145at 236.054 kb on + strand, within BACOVA_03145at 236.061 kb on + strand, within BACOVA_03145at 236.193 kb on - strandat 236.193 kb on - strandat 236.193 kb on - strandat 236.197 kb on + strandat 236.198 kb on - strandat 236.198 kb on - strandat 236.200 kb on - strandat 236.213 kb on - strandat 236.222 kb on - strandat 236.625 kb on - strandat 236.632 kb on - strandat 236.635 kb on - strandat 236.638 kb on - strandat 236.638 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.748 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.812 kb on - strand, within BACOVA_03147at 236.926 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 237.212 kb on - strand, within BACOVA_03147at 237.359 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.428 kb on - strandat 237.428 kb on - strandat 237.428 kb on - strandat 237.435 kb on - strandat 237.438 kb on - strandat 237.472 kb on - strandat 237.596 kb on - strand, within BACOVA_03148

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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235,225 + -0.9
235,226 - -0.1
235,228 + +1.2
235,228 + +0.4
235,228 + -0.2
235,228 + +1.4
235,228 + +1.0
235,232 + -1.2
235,232 + -0.1
235,233 - -0.3
235,265 + -0.7
235,319 + BACOVA_03143 0.16 +0.4
235,320 - BACOVA_03143 0.16 +0.3
235,320 - BACOVA_03143 0.16 +0.6
235,325 + BACOVA_03143 0.17 -0.5
235,325 + BACOVA_03143 0.17 -0.1
235,334 - BACOVA_03143 0.20 -1.2
235,356 + BACOVA_03143 0.26 -0.0
235,357 - BACOVA_03143 0.26 -0.5
235,420 + BACOVA_03143 0.43 -0.1
235,457 - BACOVA_03143 0.52 +0.5
235,469 + BACOVA_03143 0.56 +1.5
235,469 + BACOVA_03143 0.56 +0.3
235,524 - BACOVA_03143 0.70 -0.8
235,555 + BACOVA_03143 0.78 +0.7
235,555 + BACOVA_03143 0.78 -0.3
235,556 - BACOVA_03143 0.79 +0.5
235,574 - BACOVA_03143 0.83 -0.3
235,574 - BACOVA_03143 0.83 +1.7
235,621 + +0.1
235,622 - -0.5
235,628 - +0.3
235,629 + +0.6
235,629 + -0.0
235,676 + BACOVA_03144 0.19 +0.2
235,710 + BACOVA_03144 0.31 +0.4
235,745 + BACOVA_03144 0.43 +2.1
235,829 + BACOVA_03144 0.71 -1.3
235,983 + +0.2
235,984 - +0.8
235,984 - -1.7
236,024 + BACOVA_03145 0.17 +2.0
236,044 + BACOVA_03145 0.26 +0.8
236,045 - BACOVA_03145 0.26 +1.1
236,045 - BACOVA_03145 0.26 +1.1
236,054 + BACOVA_03145 0.30 -0.6
236,061 + BACOVA_03145 0.33 -0.7
236,193 - +0.1
236,193 - -1.3
236,193 - +0.5
236,197 + -2.0
236,198 - +0.4
236,198 - +0.1
236,200 - +0.4
236,213 - -0.4
236,222 - +0.3
236,625 - -1.5
236,632 - -0.3
236,635 - +0.4
236,638 - -1.6
236,638 - -1.4
236,703 - +0.7
236,703 - -0.5
236,703 - -0.4
236,748 - BACOVA_03147 0.14 +0.3
236,795 - BACOVA_03147 0.19 +1.7
236,795 - BACOVA_03147 0.19 +0.5
236,812 - BACOVA_03147 0.21 -1.7
236,926 - BACOVA_03147 0.35 +0.4
236,984 - BACOVA_03147 0.42 -0.5
236,984 - BACOVA_03147 0.42 -0.3
236,984 - BACOVA_03147 0.42 -1.1
237,212 - BACOVA_03147 0.70 +0.0
237,359 - BACOVA_03147 0.88 -0.8
237,361 - BACOVA_03147 0.88 +0.9
237,361 - BACOVA_03147 0.88 -0.8
237,361 - BACOVA_03147 0.88 +0.3
237,361 - BACOVA_03147 0.88 -1.3
237,361 - BACOVA_03147 0.88 +1.1
237,361 - BACOVA_03147 0.88 +0.1
237,361 - BACOVA_03147 0.88 -0.0
237,361 - BACOVA_03147 0.88 +0.1
237,428 - +0.0
237,428 - -0.5
237,428 - -0.7
237,435 - +1.0
237,438 - +0.9
237,472 - +0.1
237,596 - BACOVA_03148 0.33 -2.0

Or see this region's nucleotide sequence